| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2229 |
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| Symbol | |
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| ID | 4172381 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2696765 |
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| End bp | 2697982 |
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| Gene Length | 1218 bp |
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| Protein Length | 405 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638055237 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_661801 |
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| Protein GI | 109898546 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGATTA AAACGATACC GTTTATCAGT TTTAACGCAC TCACGATACT TACATTACTT
ATGAGCACTG CACTGCTTTC GGCTTGTGGC GGCGCAGATG CCACCAGCAC TGAGCCCGAA
CAAGCATTGG TCATTTCAGT GCCCGTAGAA GCAGGCGCAC TGCATATCGG CGAGATTTCC
TCTAATTACA CCACCACAGC GGTACTTGAA GCCAAAGAAG AAGCCTACGT AGTCGCCCGC
GCTTCGGGCA TCATCGAACA CATTTACGTA GAAGAAGGTG ATTACGTCAC CAAAGGTCAA
GTACTTGCGC AATTAGAGCC AGAGCGTTAT CGCTTAAACC TCGCACGGGC AAAAGCGGAT
TTAATTGGCA TCGAAAAAGA GTTGGCAAAA ATAGACAAGG TGTATAACCA AAAGCTAGTG
AGCGACGACA CCTACGATAA AATTAGCGCC CAATACGCAT CCACTAAGGC GACGTTATCG
CTGGCGCAGT TAGACTTAAA AGAAGCCACT ATCGTGGCGC CTATTTCTGG TTATATTGCC
GCACGTAACG CCAAAGTGGG TAATTTAACC GAATCATTTC AACGTGCTCA AATGTTCCAT
ATCGTCGAAC AAAATGAATT ACATGGCGTT GTCTACTTAC CTGAAAAAGA ACTATCTCGG
GTGCATAAAA ATCAAGCGGC AAAATTAACC TTAAGTGCAT TGCAAGACAG TACGGTCACT
GCCTATGTTG AGCGCATCAG CCCAGTCATT GATGCCGCCA CTGGCACGTT TAAAGTGACG
CTTCGTGTAC CAAATGATAA AAAATTGCTT AAAGCCGGTA TGTTCGCCCA TGTCAGTTTG
AATTACGACA CCCACCAGCA CGCTACTCTT ATGCCTCGTA AAGCCATGCT CAGCATTGAT
AATAAAGTCA ATGTGTTTGT TGTGAATGAC GGCCTTGCCC ACAAACAAGA AATTCAAGTG
GGTTATCAAG AGGGTGACTA TGTAGAGATA CTCAGTGGCT TGAAGGGCAA CGAGCATGTG
GTGATTACCG GTCATCAAAA TTTGAAAGAC CAAGCACCTG TAGAAGTGGT TAATGCCGAT
TCACTTATGT TACAGGCTCG TTCACCTGTT GAAGAGCCAG TTTCTAGCAC TCAAAAGCCC
ATTGAATTTA ACGGTGATGA CGCGGGCGAA GCCGCAGATA CAGACACAAC AGCCTCAAAC
GCCGATCACA CTCGCTAA
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| Protein sequence | MTIKTIPFIS FNALTILTLL MSTALLSACG GADATSTEPE QALVISVPVE AGALHIGEIS
SNYTTTAVLE AKEEAYVVAR ASGIIEHIYV EEGDYVTKGQ VLAQLEPERY RLNLARAKAD
LIGIEKELAK IDKVYNQKLV SDDTYDKISA QYASTKATLS LAQLDLKEAT IVAPISGYIA
ARNAKVGNLT ESFQRAQMFH IVEQNELHGV VYLPEKELSR VHKNQAAKLT LSALQDSTVT
AYVERISPVI DAATGTFKVT LRVPNDKKLL KAGMFAHVSL NYDTHQHATL MPRKAMLSID
NKVNVFVVND GLAHKQEIQV GYQEGDYVEI LSGLKGNEHV VITGHQNLKD QAPVEVVNAD
SLMLQARSPV EEPVSSTQKP IEFNGDDAGE AADTDTTASN ADHTR
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