Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_2218 |
Symbol | |
ID | 4172370 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 2678590 |
End bp | 2682396 |
Gene Length | 3807 bp |
Protein Length | 1268 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638055226 |
Product | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
Protein accession | YP_661790 |
Protein GI | 109898535 |
COG category | [C] Energy production and conversion [E] Amino acid transport and metabolism |
COG ID | [COG0506] Proline dehydrogenase [COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.270938 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTGCAGG CAAATTTACC ATCAATACGC CAGACTATTC GCACTAATAC CTACCTCAAT GAGGGGGATA GTGTTGAATA TATGCTCAAG ACTAATCCAT TGAGTCAAGA GGCGCGCAAT AACGTACATG CAACGGCGTT ATCATTTGTA GAGCATTGTA GAGCGAATCC CGACAAGCAG GGGTTATTTG ACGCCTTCCT ACAAGAATAC AGTTTATCTA GCCATGAAGG TGTCGTGTTG ATGTGTTTAG CTGAAGCACT ATTGCGGGTA CCTGATAGCT ATACTGTTGA CCGTCTTATC GCTGAAAAAA TTCATCTTGG CCAGTGGGGT GAGCACATAG GTAACTCTGA AGAGTTACTA GTGAATGCTG CAAGCGTAGG CTTATCGCTT ACCAGTAAAA TACTAGGTAA AGAACAGAGT AAAGGCCAGA GTAATGAGCA GGGCAGCAAT GATGAGCCAA GCAACTGGTT CCGTAAGCTT ATTCAACGAG TAGGTGAGCC TGTTGTGCGC GGTGCGACGT TGCAGGCCAT GAAATTTATG GGGCAGCAAT ACGTATTGGG CCGAGATATT AAAGAAGCGG CAAAGCGTGG TAGAAAAGGC AATGTTGAAG GCACTCGCTT CTCATTTGAT ATGTTAGGGG AAGGGGCCAG AACCTACAAA GATGCCAATA AATATTATGA TGCTTATTTA TCAGCTATCC GCTCCATTGG GCAAAGTAAC GATGAGAGCG ATGTTAATTT AGCGGACGGG ATATCGGTAA AACTCAGTGC GTTGCACCCA CGTTATGAAT TCAGTCATCA TCATTTAGTG ATCGATGAAT TACTGCCAAG CGTTTTGTCT TTGGCGCTTG AAGCCAAAAA ATTCAATATT GGTTTTACCA TTGATGCAGA AGAAGCAGCT CGCTTGGACA TTGAACTCGA TGTATTTCAA GCACTGGCGT TTGCGCCGGA ATTAGCCAAT TGGAACGGAT TGGGTTTTGT GCTGCAAGCC TATCAGAAAC GTGCACTTTT TGTAGTGGAC TGGCTGGTCG AGTTAGCGAA AGCAAGTGAA CGTACATTAA TGGTGCGCTT AGTTAAAGGC GCATATTGGG ATGCAGAAAT TAAACATGCA CAAGAAATGG GGTTGAGTGA ATTTCCGGTC TTTACTCGAA AAGTACACAC AGATTTGAGT TATCAAGTTT GTGCTGGCAA ATTGCTCGAT AACCGAGATT GTATCTACCC TCAATTTGCA ACACACAATG CTTATACTGT TGCGCTCATA ATGGAAATGG CGGGAGACGA CACCAATAGT TTTGAGTTCC AGCGTCTGCA CGGCATGGGT GACTTACTTT ACGGCCAAAT TAGAGAAACC ACCGGGCGTG AGTTACCTCT AAGAGTCTAT GCGCCAGTGG GTGTTCACAG AGACCTACTC CCTTACTTAG TGCGTCGATT ACTTGAGAAC GGCGCCAATG GTTCATTTGT TAATCAATTC TTAGATGGTA AAATTGCCGC CTCGAATCTG GTGCAGAGTG TTGAAACAAC AATCGGCAAG GCTCAGGGAA GCCGCAATAG CCAAATCCCT CTGGCTCAGG ACATATTTAA CGCCTTCGGT GAAAAGCGTG ATAACTCCCG GGGTATCGAT TTAGACGATC CTCTGGCATT TGCTACGGTT GCCCATCAAG TAACGGCTTT TTCTGAAAAA AAATGGCAGG CAGGACCGAT CATCAACGGC GTGATGAACA CCGACAATGC TTACCCTTTG TATTCGCCTG CCGCTACTGA CAGCCTGATA GGGTACTGCA CCGATGCTTC TGCAAAAGAT GTAGACATTG CGATGAATGC GGCGTCTGCA GCGCAACCAG CTTGGCAAGC AACGCCAGTA AATCAGCGTG CACAAATCAT GGAAAAGGTT GCTGATTTAT TGGAAGCACA AACAGAAGAG CTAACCGCAC TCATCAGTTT TGAAGCGGGT CGTACCTTAA ACGATGGTAT ATCAGAAGTA CGAGAAGCTG TTGATTTCTG TCGCTACTAC GCGTTACAAG TGCGCCATCT GGTATCCGAT AGCCCAACCC AACCCAAGTT AAAACAAGGT CAGGGCGTTT TCGTGTGCAT TAGCCCTTGG AACTTCCCGT TAGCTATTTT TGTTGGTCAA ATTGCAGCAG CGTTAGTGGC AGGTAATACA GTCGTGGCCA AACCGGCGGA ACAGTCGCCA TTGATTGCGA CTCAAGCTAT TAAACTAATG CACGATGCAG GGGTGCCCAC AGATGTATTG CACTTACTGA CGGGCTCTGG ACGCGAACTT GGTCCAGTAC TAATGGCTGA TGAAAGGGTT GCAGGGGTCG CATTTACTGG GTCTACCGCA ACGGCACAGA GTATTCAAAA GGAGTTGATT AAACGTGGTA CTACCTTGCC GCCTTTTATA GCTGAAACGG GCGGACAAAA TGTCATGTTA GTGGACTCAA CAGCGCTACC CGAGCAGGTC GTTGATGATG TCATTCAATC TGCGTTCTTA AGTGCTGGGC AACGTTGTTC TGCGCTGCGT GTATTGTATG TACAAAATGA TATCGCCGAT AACTTGATTG ACATGTTAAA AGGTGCGCTT GCTACCTTAC AAATAGATCA ACCCTGGAAA CTAAGTACAG ATCTTGGGCC AGTCATCGAC GCAAATGCAT TAAATACATT GCAAGCGCAT TGTGAAAAAA TGACCAAAGA AGCCAAATTT GTTGCCAAGG CAAAGGCACC AAAAGACGTT AAAGGCTTTT ATATTTGTCC TCAGGTGTTT GAAATTGAAA ATATCAATGT ACTAGAACGC GAAGTCTTTG GACCTATCTT ACATATTGTT CGCTATAACG CGAAAGAGTT AGACCGCGTT CTTAAAGACA TTAACGATAC AGGTTATGGC TTAACGCTGG GAGTGCATAG TCGACTTAAA GAGTTCGCCG ATAAGGTGTA CGCTGAAACA CATGTTGGTA ATACCTACAT CAATCGAAAC ATGGTCGGGG CGGTCGTTGG GGTAAACCCG TTTGGTGGTC ATGGTCTATC AGGTACTGGT TTCAAAGCCG GAGGTCCGCA CTACTTATTA CGTTTTACTA ATTTATGGGC TGCGGAGCCT GTTGTCGATC AACTACCTAG CGAAATATCA GAGACGTCTA GCCTTAGCAA AGATACCCAA ATGAGTTTGC GCGTGGCCAA AGCTGAGCAA AGTACTTGGC AAAAGGTGCC CATCACCCAG CGCATTAAGT TCATTGAGAA TGCTTTCGCG GGTGCGCAAC ATCTACCGGC ATTTTCAGCG ATGCCAGCGG ATAGCTTAAA GCAAGCTTCG CGAATGTTTG CACAAGCGCG GCACAATTTT GGCGAGGCCA TAACGTTACC AGGGCCAACA GGTGAAACGA ATGAGCTATC ACTTCACGGC CGCGGTGTAT TTTTAGTCGT GCTTAAACAA GGTGATGAAG TAACCAATTT ACTGCAAGCA ATGGGAGCTT TGTTAGCAGG AAATAGTATT GTGCTTATTC ATTTAGCGCA AACGCCAGCT AGCACCAGCT CGGTGTACAA AGCGTTAGAA AGTTTTGTGC CGATGGCAAA CGTGCAATGT ATTGATTCAC AACAAGCGTT AATGGCACTG TTATTAATCG ACGGTATAGC AGGCGTGGCA GGAAGTAACG CCCCAGGACT CATTAGCGCT TTGGGTGCCA GAAAGGGGGC AATCATCCCG TTTGTGGGAA GTATGTCTGC AGATTATAGT TTGCTGCGTT TTGCCACAGA AAAAACCAAG ACGGATAACG TCGTAGCCAC AGGTGGTAAT GCGATGCTGC TAAACCTTAA AGAGTAA
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Protein sequence | MLQANLPSIR QTIRTNTYLN EGDSVEYMLK TNPLSQEARN NVHATALSFV EHCRANPDKQ GLFDAFLQEY SLSSHEGVVL MCLAEALLRV PDSYTVDRLI AEKIHLGQWG EHIGNSEELL VNAASVGLSL TSKILGKEQS KGQSNEQGSN DEPSNWFRKL IQRVGEPVVR GATLQAMKFM GQQYVLGRDI KEAAKRGRKG NVEGTRFSFD MLGEGARTYK DANKYYDAYL SAIRSIGQSN DESDVNLADG ISVKLSALHP RYEFSHHHLV IDELLPSVLS LALEAKKFNI GFTIDAEEAA RLDIELDVFQ ALAFAPELAN WNGLGFVLQA YQKRALFVVD WLVELAKASE RTLMVRLVKG AYWDAEIKHA QEMGLSEFPV FTRKVHTDLS YQVCAGKLLD NRDCIYPQFA THNAYTVALI MEMAGDDTNS FEFQRLHGMG DLLYGQIRET TGRELPLRVY APVGVHRDLL PYLVRRLLEN GANGSFVNQF LDGKIAASNL VQSVETTIGK AQGSRNSQIP LAQDIFNAFG EKRDNSRGID LDDPLAFATV AHQVTAFSEK KWQAGPIING VMNTDNAYPL YSPAATDSLI GYCTDASAKD VDIAMNAASA AQPAWQATPV NQRAQIMEKV ADLLEAQTEE LTALISFEAG RTLNDGISEV REAVDFCRYY ALQVRHLVSD SPTQPKLKQG QGVFVCISPW NFPLAIFVGQ IAAALVAGNT VVAKPAEQSP LIATQAIKLM HDAGVPTDVL HLLTGSGREL GPVLMADERV AGVAFTGSTA TAQSIQKELI KRGTTLPPFI AETGGQNVML VDSTALPEQV VDDVIQSAFL SAGQRCSALR VLYVQNDIAD NLIDMLKGAL ATLQIDQPWK LSTDLGPVID ANALNTLQAH CEKMTKEAKF VAKAKAPKDV KGFYICPQVF EIENINVLER EVFGPILHIV RYNAKELDRV LKDINDTGYG LTLGVHSRLK EFADKVYAET HVGNTYINRN MVGAVVGVNP FGGHGLSGTG FKAGGPHYLL RFTNLWAAEP VVDQLPSEIS ETSSLSKDTQ MSLRVAKAEQ STWQKVPITQ RIKFIENAFA GAQHLPAFSA MPADSLKQAS RMFAQARHNF GEAITLPGPT GETNELSLHG RGVFLVVLKQ GDEVTNLLQA MGALLAGNSI VLIHLAQTPA STSSVYKALE SFVPMANVQC IDSQQALMAL LLIDGIAGVA GSNAPGLISA LGARKGAIIP FVGSMSADYS LLRFATEKTK TDNVVATGGN AMLLNLKE
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