| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2218 |
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| Symbol | |
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| ID | 4172370 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2678590 |
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| End bp | 2682396 |
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| Gene Length | 3807 bp |
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| Protein Length | 1268 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638055226 |
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| Product | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
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| Protein accession | YP_661790 |
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| Protein GI | 109898535 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
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| TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.270938 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGCAGG CAAATTTACC ATCAATACGC CAGACTATTC GCACTAATAC CTACCTCAAT
GAGGGGGATA GTGTTGAATA TATGCTCAAG ACTAATCCAT TGAGTCAAGA GGCGCGCAAT
AACGTACATG CAACGGCGTT ATCATTTGTA GAGCATTGTA GAGCGAATCC CGACAAGCAG
GGGTTATTTG ACGCCTTCCT ACAAGAATAC AGTTTATCTA GCCATGAAGG TGTCGTGTTG
ATGTGTTTAG CTGAAGCACT ATTGCGGGTA CCTGATAGCT ATACTGTTGA CCGTCTTATC
GCTGAAAAAA TTCATCTTGG CCAGTGGGGT GAGCACATAG GTAACTCTGA AGAGTTACTA
GTGAATGCTG CAAGCGTAGG CTTATCGCTT ACCAGTAAAA TACTAGGTAA AGAACAGAGT
AAAGGCCAGA GTAATGAGCA GGGCAGCAAT GATGAGCCAA GCAACTGGTT CCGTAAGCTT
ATTCAACGAG TAGGTGAGCC TGTTGTGCGC GGTGCGACGT TGCAGGCCAT GAAATTTATG
GGGCAGCAAT ACGTATTGGG CCGAGATATT AAAGAAGCGG CAAAGCGTGG TAGAAAAGGC
AATGTTGAAG GCACTCGCTT CTCATTTGAT ATGTTAGGGG AAGGGGCCAG AACCTACAAA
GATGCCAATA AATATTATGA TGCTTATTTA TCAGCTATCC GCTCCATTGG GCAAAGTAAC
GATGAGAGCG ATGTTAATTT AGCGGACGGG ATATCGGTAA AACTCAGTGC GTTGCACCCA
CGTTATGAAT TCAGTCATCA TCATTTAGTG ATCGATGAAT TACTGCCAAG CGTTTTGTCT
TTGGCGCTTG AAGCCAAAAA ATTCAATATT GGTTTTACCA TTGATGCAGA AGAAGCAGCT
CGCTTGGACA TTGAACTCGA TGTATTTCAA GCACTGGCGT TTGCGCCGGA ATTAGCCAAT
TGGAACGGAT TGGGTTTTGT GCTGCAAGCC TATCAGAAAC GTGCACTTTT TGTAGTGGAC
TGGCTGGTCG AGTTAGCGAA AGCAAGTGAA CGTACATTAA TGGTGCGCTT AGTTAAAGGC
GCATATTGGG ATGCAGAAAT TAAACATGCA CAAGAAATGG GGTTGAGTGA ATTTCCGGTC
TTTACTCGAA AAGTACACAC AGATTTGAGT TATCAAGTTT GTGCTGGCAA ATTGCTCGAT
AACCGAGATT GTATCTACCC TCAATTTGCA ACACACAATG CTTATACTGT TGCGCTCATA
ATGGAAATGG CGGGAGACGA CACCAATAGT TTTGAGTTCC AGCGTCTGCA CGGCATGGGT
GACTTACTTT ACGGCCAAAT TAGAGAAACC ACCGGGCGTG AGTTACCTCT AAGAGTCTAT
GCGCCAGTGG GTGTTCACAG AGACCTACTC CCTTACTTAG TGCGTCGATT ACTTGAGAAC
GGCGCCAATG GTTCATTTGT TAATCAATTC TTAGATGGTA AAATTGCCGC CTCGAATCTG
GTGCAGAGTG TTGAAACAAC AATCGGCAAG GCTCAGGGAA GCCGCAATAG CCAAATCCCT
CTGGCTCAGG ACATATTTAA CGCCTTCGGT GAAAAGCGTG ATAACTCCCG GGGTATCGAT
TTAGACGATC CTCTGGCATT TGCTACGGTT GCCCATCAAG TAACGGCTTT TTCTGAAAAA
AAATGGCAGG CAGGACCGAT CATCAACGGC GTGATGAACA CCGACAATGC TTACCCTTTG
TATTCGCCTG CCGCTACTGA CAGCCTGATA GGGTACTGCA CCGATGCTTC TGCAAAAGAT
GTAGACATTG CGATGAATGC GGCGTCTGCA GCGCAACCAG CTTGGCAAGC AACGCCAGTA
AATCAGCGTG CACAAATCAT GGAAAAGGTT GCTGATTTAT TGGAAGCACA AACAGAAGAG
CTAACCGCAC TCATCAGTTT TGAAGCGGGT CGTACCTTAA ACGATGGTAT ATCAGAAGTA
CGAGAAGCTG TTGATTTCTG TCGCTACTAC GCGTTACAAG TGCGCCATCT GGTATCCGAT
AGCCCAACCC AACCCAAGTT AAAACAAGGT CAGGGCGTTT TCGTGTGCAT TAGCCCTTGG
AACTTCCCGT TAGCTATTTT TGTTGGTCAA ATTGCAGCAG CGTTAGTGGC AGGTAATACA
GTCGTGGCCA AACCGGCGGA ACAGTCGCCA TTGATTGCGA CTCAAGCTAT TAAACTAATG
CACGATGCAG GGGTGCCCAC AGATGTATTG CACTTACTGA CGGGCTCTGG ACGCGAACTT
GGTCCAGTAC TAATGGCTGA TGAAAGGGTT GCAGGGGTCG CATTTACTGG GTCTACCGCA
ACGGCACAGA GTATTCAAAA GGAGTTGATT AAACGTGGTA CTACCTTGCC GCCTTTTATA
GCTGAAACGG GCGGACAAAA TGTCATGTTA GTGGACTCAA CAGCGCTACC CGAGCAGGTC
GTTGATGATG TCATTCAATC TGCGTTCTTA AGTGCTGGGC AACGTTGTTC TGCGCTGCGT
GTATTGTATG TACAAAATGA TATCGCCGAT AACTTGATTG ACATGTTAAA AGGTGCGCTT
GCTACCTTAC AAATAGATCA ACCCTGGAAA CTAAGTACAG ATCTTGGGCC AGTCATCGAC
GCAAATGCAT TAAATACATT GCAAGCGCAT TGTGAAAAAA TGACCAAAGA AGCCAAATTT
GTTGCCAAGG CAAAGGCACC AAAAGACGTT AAAGGCTTTT ATATTTGTCC TCAGGTGTTT
GAAATTGAAA ATATCAATGT ACTAGAACGC GAAGTCTTTG GACCTATCTT ACATATTGTT
CGCTATAACG CGAAAGAGTT AGACCGCGTT CTTAAAGACA TTAACGATAC AGGTTATGGC
TTAACGCTGG GAGTGCATAG TCGACTTAAA GAGTTCGCCG ATAAGGTGTA CGCTGAAACA
CATGTTGGTA ATACCTACAT CAATCGAAAC ATGGTCGGGG CGGTCGTTGG GGTAAACCCG
TTTGGTGGTC ATGGTCTATC AGGTACTGGT TTCAAAGCCG GAGGTCCGCA CTACTTATTA
CGTTTTACTA ATTTATGGGC TGCGGAGCCT GTTGTCGATC AACTACCTAG CGAAATATCA
GAGACGTCTA GCCTTAGCAA AGATACCCAA ATGAGTTTGC GCGTGGCCAA AGCTGAGCAA
AGTACTTGGC AAAAGGTGCC CATCACCCAG CGCATTAAGT TCATTGAGAA TGCTTTCGCG
GGTGCGCAAC ATCTACCGGC ATTTTCAGCG ATGCCAGCGG ATAGCTTAAA GCAAGCTTCG
CGAATGTTTG CACAAGCGCG GCACAATTTT GGCGAGGCCA TAACGTTACC AGGGCCAACA
GGTGAAACGA ATGAGCTATC ACTTCACGGC CGCGGTGTAT TTTTAGTCGT GCTTAAACAA
GGTGATGAAG TAACCAATTT ACTGCAAGCA ATGGGAGCTT TGTTAGCAGG AAATAGTATT
GTGCTTATTC ATTTAGCGCA AACGCCAGCT AGCACCAGCT CGGTGTACAA AGCGTTAGAA
AGTTTTGTGC CGATGGCAAA CGTGCAATGT ATTGATTCAC AACAAGCGTT AATGGCACTG
TTATTAATCG ACGGTATAGC AGGCGTGGCA GGAAGTAACG CCCCAGGACT CATTAGCGCT
TTGGGTGCCA GAAAGGGGGC AATCATCCCG TTTGTGGGAA GTATGTCTGC AGATTATAGT
TTGCTGCGTT TTGCCACAGA AAAAACCAAG ACGGATAACG TCGTAGCCAC AGGTGGTAAT
GCGATGCTGC TAAACCTTAA AGAGTAA
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| Protein sequence | MLQANLPSIR QTIRTNTYLN EGDSVEYMLK TNPLSQEARN NVHATALSFV EHCRANPDKQ
GLFDAFLQEY SLSSHEGVVL MCLAEALLRV PDSYTVDRLI AEKIHLGQWG EHIGNSEELL
VNAASVGLSL TSKILGKEQS KGQSNEQGSN DEPSNWFRKL IQRVGEPVVR GATLQAMKFM
GQQYVLGRDI KEAAKRGRKG NVEGTRFSFD MLGEGARTYK DANKYYDAYL SAIRSIGQSN
DESDVNLADG ISVKLSALHP RYEFSHHHLV IDELLPSVLS LALEAKKFNI GFTIDAEEAA
RLDIELDVFQ ALAFAPELAN WNGLGFVLQA YQKRALFVVD WLVELAKASE RTLMVRLVKG
AYWDAEIKHA QEMGLSEFPV FTRKVHTDLS YQVCAGKLLD NRDCIYPQFA THNAYTVALI
MEMAGDDTNS FEFQRLHGMG DLLYGQIRET TGRELPLRVY APVGVHRDLL PYLVRRLLEN
GANGSFVNQF LDGKIAASNL VQSVETTIGK AQGSRNSQIP LAQDIFNAFG EKRDNSRGID
LDDPLAFATV AHQVTAFSEK KWQAGPIING VMNTDNAYPL YSPAATDSLI GYCTDASAKD
VDIAMNAASA AQPAWQATPV NQRAQIMEKV ADLLEAQTEE LTALISFEAG RTLNDGISEV
REAVDFCRYY ALQVRHLVSD SPTQPKLKQG QGVFVCISPW NFPLAIFVGQ IAAALVAGNT
VVAKPAEQSP LIATQAIKLM HDAGVPTDVL HLLTGSGREL GPVLMADERV AGVAFTGSTA
TAQSIQKELI KRGTTLPPFI AETGGQNVML VDSTALPEQV VDDVIQSAFL SAGQRCSALR
VLYVQNDIAD NLIDMLKGAL ATLQIDQPWK LSTDLGPVID ANALNTLQAH CEKMTKEAKF
VAKAKAPKDV KGFYICPQVF EIENINVLER EVFGPILHIV RYNAKELDRV LKDINDTGYG
LTLGVHSRLK EFADKVYAET HVGNTYINRN MVGAVVGVNP FGGHGLSGTG FKAGGPHYLL
RFTNLWAAEP VVDQLPSEIS ETSSLSKDTQ MSLRVAKAEQ STWQKVPITQ RIKFIENAFA
GAQHLPAFSA MPADSLKQAS RMFAQARHNF GEAITLPGPT GETNELSLHG RGVFLVVLKQ
GDEVTNLLQA MGALLAGNSI VLIHLAQTPA STSSVYKALE SFVPMANVQC IDSQQALMAL
LLIDGIAGVA GSNAPGLISA LGARKGAIIP FVGSMSADYS LLRFATEKTK TDNVVATGGN
AMLLNLKE
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