| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2213 |
|---|
| Symbol | |
|---|
| ID | 4172365 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 2671778 |
|---|
| End bp | 2672254 |
|---|
| Gene Length | 477 bp |
|---|
| Protein Length | 158 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 638055221 |
|---|
| Product | transcription elongation factor GreA |
|---|
| Protein accession | YP_661785 |
|---|
| Protein GI | 109898530 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0782] Transcription elongation factor |
|---|
| TIGRFAM ID | [TIGR01462] transcription elongation factor GreA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTCAAT ATCCTATGAC GGCTAAAGGC GCAGAAATGT TGCGTGAAGA GCTACAACAT
TTAAAGTCAG TAAAACGACC AGAAATTATT AAATCGATTG CGGAAGCCCG TGAACACGGA
GATTTAAAAG AAAACGCTGA ATACCATGCT GCGCGTGAGC AGCAAAGCTT CTGTGAAGGG
CGTATTCAAG ATATCGAAGG TAAGTTGTCC AACGTACAAA TTATCGATGT AACCAAGATG
ACCAACACTG GGAAGGTCAT ATTTGGCACG ACAGTTACTA TATTAAATCT ACAAAGTGAC
GAAGAAATTA CTTATAAGAT TGTGGGTGAT GATGAAGCTG ACATTAAGAA TAACCTTATT
TCAGTCAGTT CGCCTATCGC CCGGGGTTTA ATCGGTAAGC AGCTAGACGA TGTGGTCACC
ATTCAAACGC CCAAGGGTGC AATTGAATTT GAAATCATTG AGGTAGAGTA CGTCTAA
|
|---|
| Protein sequence | MTQYPMTAKG AEMLREELQH LKSVKRPEII KSIAEAREHG DLKENAEYHA AREQQSFCEG
RIQDIEGKLS NVQIIDVTKM TNTGKVIFGT TVTILNLQSD EEITYKIVGD DEADIKNNLI
SVSSPIARGL IGKQLDDVVT IQTPKGAIEF EIIEVEYV
|
|---|
| |