| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2205 |
|---|
| Symbol | |
|---|
| ID | 4172357 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 2662859 |
|---|
| End bp | 2663710 |
|---|
| Gene Length | 852 bp |
|---|
| Protein Length | 283 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638055213 |
|---|
| Product | 2-dehydro-3-deoxyphosphooctonate aldolase |
|---|
| Protein accession | YP_661777 |
|---|
| Protein GI | 109898522 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2877] 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR01362] 3-deoxy-8-phosphooctulonate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00380031 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACAATT TACACAATAT TGCTGTTGGT GACATTCAGG TTGCTAACGA CAAACCTTTC
GTACTGTTTG GGGGGATGAA TGTTTTAGAA TCCCGAGATA TGGCCATGCG CATTGCTGAA
CACTACAAAG AAATTACCAG CAAACTTGGG ATCCCATATG TTTTCAAAGC CTCGTTTGAT
AAAGCCAACC GCTCATCGGT GAATTCATAT CGCGGGCCGG GTATGGATGA GGGATTAGAA
ATTTTTGCAG AAATCAAAGC GACCTTTGAT GTGCCACTAA TAACCGATGT ACATGAACCT
GCTCAAGCAG CCCCAGTCGC TGAGGTGGTT GACGTTATTC AATTACCCGC ATTTTTAGCA
CGTCAAACAG ATTTGGTAGT CGCTATGGCT AAAACGAATG CCATCATCAA CGTGAAAAAG
CCACAGTTTT TAGCCCCACA TGAAATGCGC CATATCATTA CTAAATTTAT GGAAGCCGGA
AATGACAAAA TAATTTTGTG CGAACGAGGC TCTAGTTTCG GTTACAACAA TCTGGTTGTC
GATATGCTAG GTATGGATGA AATGAAGCAA TATGCTCCTG TCATTTTTGA TGCCACGCAT
GCATTGCAAA AGCCTGGGGG CAGAACGGAT TCCGCTGATG GACGACGAGC ACAAGCAGCA
CAGTTGGCAA GAAGTGGTAT GGCGTTAGGA TTAGCTGGGT TGTTTATAGA AGCACACCCG
AACCCAAATG AAGCGAAATG TGATGGTCCA TGTGCGTTAT CATTAGACAA GTTAGAACCG
TATTTACAGC AAATGTTAGC GTTAGATGAC TTGGTAAAAG GTTTCGCACC TTTAGACACC
AGCGCAAATT AA
|
|---|
| Protein sequence | MNNLHNIAVG DIQVANDKPF VLFGGMNVLE SRDMAMRIAE HYKEITSKLG IPYVFKASFD
KANRSSVNSY RGPGMDEGLE IFAEIKATFD VPLITDVHEP AQAAPVAEVV DVIQLPAFLA
RQTDLVVAMA KTNAIINVKK PQFLAPHEMR HIITKFMEAG NDKIILCERG SSFGYNNLVV
DMLGMDEMKQ YAPVIFDATH ALQKPGGRTD SADGRRAQAA QLARSGMALG LAGLFIEAHP
NPNEAKCDGP CALSLDKLEP YLQQMLALDD LVKGFAPLDT SAN
|
|---|
| |