| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2192 |
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| Symbol | |
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| ID | 4172344 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2648910 |
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| End bp | 2650040 |
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| Gene Length | 1131 bp |
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| Protein Length | 376 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638055200 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_661764 |
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| Protein GI | 109898509 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTGTG AAGTACTTGC GTTAACAGAA GAATTAATCA ATCGACAGTC AGTCACACCT
GAAGATGCCG GTTGTCAGCA ATTAATGGCT GAGTATCTGG CCCCGTTAGG ATTTGATATT
GAATCTATGG TGTTTGACGA TACAACCAAC ATGTGGGCCC GAAAAGGCAC AGGCGGACCC
GTATTTTGTT TTGCTGGGCA CACAGATGTT GTGCCCAGCG GCCCTGCTGA AAAGTGGACA
TTTCCACCCT TTACCGCCAC CCAGCATGAA GGTCAGTTGT ACGGCCGTGG TGCTGCGGAC
ATGAAGGGCA GCCTAGCGGC GATGCTTGTT GCCACTAAAG CGTTTGTGAC CAAGCATCCT
GAACATTCAG GTTCGATCGC ATTTTTAATT ACCAGCGACG AAGAGGGTCC ATTTATTAAT
GGCACTACTC GCGTAATTGA TACCCTAGAA GCTCGCAATG AAAAAATGAC ATGGTGCCTC
GTTGGCGAGC CTTCCAGTAC TACGCTGATT GGTGATGTCG TTAAAAATGG TCGCCGGGGT
TCACTCACCG GTGATATCAC AGTGAAAGGC GTGCAGGGTC ACGTTGCATA CCCTCACTTA
GCTAAAAATC CAATTCACTT GTCGGCACCC GCTTTTGCTG AGTTAGCGCA AACCCATTGG
GACAGTGGAA ATGCCTCCTT CCCTCCTACT AGCTTCCAAG TCTCTAACAT CAATTCAGGC
ACAGGCGCCG GTAATGTTAT CCCTGGTGAC TTATCGGCAT GTTTTAACTT TCGCTTTTCA
ACAGAAGTCA CCGACAAGCA ACTTATTGAG CGCGTAACGA CGATACTCGA TAAATACGAT
TTCGACTACC ACATCGACTG GACATTCAAT GGGCAACCTT TCTTGACCGA TTCTGGAAAA
TTAGTTGAAG CCACACAAAG CGCCATAAAA GACGTAACGG GCCGGGAAAC AGAACTTTCT
ACGGCCGGCG GCACATCCGA TGGGCGCTTT ATCGCTCCAA CTGGTGCGCA AGTCATTGAA
TTGGGGCCCA TCAACGCAAC TATTCATAAA ATTGATGAAA ATGTGAATAT TAACGATCTT
GCACAACTTG CGAAAATATA TGAAGGGATT TTGCAAAGGC TATTGGCTTG A
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| Protein sequence | MSCEVLALTE ELINRQSVTP EDAGCQQLMA EYLAPLGFDI ESMVFDDTTN MWARKGTGGP
VFCFAGHTDV VPSGPAEKWT FPPFTATQHE GQLYGRGAAD MKGSLAAMLV ATKAFVTKHP
EHSGSIAFLI TSDEEGPFIN GTTRVIDTLE ARNEKMTWCL VGEPSSTTLI GDVVKNGRRG
SLTGDITVKG VQGHVAYPHL AKNPIHLSAP AFAELAQTHW DSGNASFPPT SFQVSNINSG
TGAGNVIPGD LSACFNFRFS TEVTDKQLIE RVTTILDKYD FDYHIDWTFN GQPFLTDSGK
LVEATQSAIK DVTGRETELS TAGGTSDGRF IAPTGAQVIE LGPINATIHK IDENVNINDL
AQLAKIYEGI LQRLLA
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