| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2188 |
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| Symbol | |
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| ID | 4172340 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2645619 |
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| End bp | 2646707 |
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| Gene Length | 1089 bp |
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| Protein Length | 362 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638055196 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_661760 |
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| Protein GI | 109898505 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTGCCTC AGAATAGGAA AAGTGACACT GCGTTGTTTG ACGCTTTGCG CATTCGATCA
AGTTTAACCG TGGAACGTTT GTCCGCTTTA GTCAATCAAC CCAATATTAA TCTTAAGGCG
TTGAATCAAT GCCTTTCCCC TCTTGAAAAA CAACTTCCTG CGATTATTGA TGAGATCTAT
GCGTCACACC CAGAGATGGC AGATGTGGCG TTGCAGACTG ATGAGTTCAA TCTCTCTACA
GATTTGCGAT ATCTTCTTAA GGCCTATATC AAGGAGTTAT TGGTCAATAA TGAGTATGAC
GAGCAGTACA TCAGTAACCG TATCGTGTTA ATTGTACATT ATAAAAATAT TGGTGTACCA
GCGTTAACCT TCATTCAGTT TATCGATACT TTGCGCCATG TATTACTCCA ACATATTGAG
AAGATACCGA CTTTGAGTTC TATAAAAGAG CCAATTAGCT TGGCCATTCG CCAATTACTG
CAGTTCGACC TTGAGTTGTG TGTTGACATT AACGTGGCAC ATTTACACGC TGATATCGAG
GAACTGCGAA AAGAACACAA CGAATTACGC AAAAATATTG AAGCTAGAAT TGCCCAGCGC
ACAAAAGATT TGATGGAGCA GGTGCGATTG GACCCGCTGA CTAAAATATA CAACATCAGT
GCGATGCAAG AAATGCTCGA TAAAGAGCTC GCATTAGCGA AGCGTCGGCA CACAAAGTTG
TCGTTAGTGT ATTTTGATGT TGACCACTTC AAGCGTATAA ATGACACCGA AGGGCACTTA
AAAGGAGATG AAGTGCTTAA AGAAATCGGT CAAACACTGC GCCAGTGCGT GCGTCAAACA
GACATAGCAT GCCGTTACGG TGGTGATGAG TTTTGTGTCG TGTTACTGGA GTGTAATGCA
CTTGAAGCGC AGAAAGTATG TGAAAAACTG ATCGCTACTT TTCAATCCCG TTACCCGACT
TATTCGTTTA GTATGGGGAT CGCTGAAACA GGAGCATCGG AATTTGTCAG TGTTAAACAG
TTGATCCATT TAGCGGACCA GAAAATGTAT CTTGCTAAAA AACAAGCGGG TTACAAAATA
GTACTTTGA
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| Protein sequence | MVPQNRKSDT ALFDALRIRS SLTVERLSAL VNQPNINLKA LNQCLSPLEK QLPAIIDEIY
ASHPEMADVA LQTDEFNLST DLRYLLKAYI KELLVNNEYD EQYISNRIVL IVHYKNIGVP
ALTFIQFIDT LRHVLLQHIE KIPTLSSIKE PISLAIRQLL QFDLELCVDI NVAHLHADIE
ELRKEHNELR KNIEARIAQR TKDLMEQVRL DPLTKIYNIS AMQEMLDKEL ALAKRRHTKL
SLVYFDVDHF KRINDTEGHL KGDEVLKEIG QTLRQCVRQT DIACRYGGDE FCVVLLECNA
LEAQKVCEKL IATFQSRYPT YSFSMGIAET GASEFVSVKQ LIHLADQKMY LAKKQAGYKI
VL
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