| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2183 |
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| Symbol | |
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| ID | 4172335 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2638116 |
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| End bp | 2638859 |
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| Gene Length | 744 bp |
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| Protein Length | 247 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638055191 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_661755 |
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| Protein GI | 109898500 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000966218 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCGATT TTCAACCAAT ATCTGGTTTA TTAGCCTCAA AAACCATTCT CGTTACGGGT
GCTGGCGACG GCATAGGTAA AGAAGCAGCC CTACAATTCG CAAAGTACGG CGCTACCGTT
ATTCTGTTGG GCAGAACAGT GAGTAAGCTC GAAGCGGTAT ACGATAAAAT AGTCGATAAT
GGAGGCCCTG AGCCGGCTAT TATTCCTTTG GACTTACAGG GTGCAACGGT GCAACATTAT
CGCGATATGG CTAGCACCAT TGATGCTCAG TTTCCTAGCC TAGATGGCGT ATTGCATAAT
GCTAGCCTGC TAGGACACTT AGAGCCTTTG CAGCAGATAA GCGAAGAAGA CTGGAATAAA
GTCATGCAGG TGAATGTAAA TAGCCAATTT TTTATGACAC AGGCATTGAT CCCAGTTTTA
AAAAAATCAG ACAATGCTTC GATTGTTTTT ACCACCTCAA GTGTGGGGCT CAAAGGCCGT
GCTTACTGGG GCAGCTATGC AATTTCTAAA TTTGCGACCC AAGGGATGAT GGAAGTCATT
GCGGATGAAA ATGAGAACAC ATCAATACGC GCCAATTGCA TTAATCCCGG TGGAACACGC
ACCAATATGC GTGCTCAGGC CTTTCCTGGT GAAGATCCTG AAACCTTGAA AACGCCGGCG
GACATCATGC CACTGTACTT GTATTTAATG AGTGACGAAA GCAGGCACGA GACAGGTCAA
ACCTTTCATG CGCAGCCTAA ATAG
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| Protein sequence | MLDFQPISGL LASKTILVTG AGDGIGKEAA LQFAKYGATV ILLGRTVSKL EAVYDKIVDN
GGPEPAIIPL DLQGATVQHY RDMASTIDAQ FPSLDGVLHN ASLLGHLEPL QQISEEDWNK
VMQVNVNSQF FMTQALIPVL KKSDNASIVF TTSSVGLKGR AYWGSYAISK FATQGMMEVI
ADENENTSIR ANCINPGGTR TNMRAQAFPG EDPETLKTPA DIMPLYLYLM SDESRHETGQ
TFHAQPK
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