Gene Patl_2182 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_2182 
Symbol 
ID4172334 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp2635239 
End bp2637857 
Gene Length2619 bp 
Protein Length872 aa 
Translation table11 
GC content48% 
IMG OID638055190 
Producthypothetical protein 
Protein accessionYP_661754 
Protein GI109898499 
COG category 
COG ID 
TIGRFAM ID[TIGR03502] extracellular lipase, Pla-1/cef family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000870738 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATAAAC TTTTGCTTAG TGCGAGTATC GCAGCTGTGC TGGGACTTAC AGGCTGTAAT 
GGAGACTCCG TAGCAGATAT AGAGACCAAT ACCCCCGTCG AAAAACCATT CGCCCGGGTA
GTATTTGACC CTGCAAACAG CGATCTTAAT TTGCCCAACG ATTTGTTAAT GTTACCAAGT
GGTAACTTTT TCGACTTTAC ATTAAATACC GAAGGCGATG CCGTATTTGA TGGCGGCAAC
CCAGAACACG CACTAAGCGC GCTAGATGGA TGGTCAACAC AAAATCCATT TTCAATCAGA
GTAACCCTAC CTACTGGACT TGATATTGAC GCAAGCAGTG TAAATGGCGC GTCCATCAAA
CTATTTAAAG CAACCCAAGC CCTAGAAGGC ACCTCGGCAA CGTGTCAGGC CATAGCCGCA
GTAGCCGCAG CACCAGGTGT ACCCTGTGAA CTAGGTGAAG AACTAGTGTA TGGGGTCGAC
TTTGTCGCTT CCTACACCAA TGAAGGTTCA GGCTCAATTG CCGTTATACC TCTTAAGCCG
TTGGCATCTA GCCAAGGCCA TATGTTGGTG GTAACTGATG CTTTGCTTGA TACTGATGGA
AAGAGCGTTA AAGGCTCAAG TTCGTGGGAG CTCGCACGTC AAGATATTAA TACCTTACCC
CTTGCCACCG AAGAGCAGCT GCAATTACAA ACATTAGTTA ATAGTTTGGT GGATGTGGTG
ATCCCCTCTG GTATAGAGCG TGAAGCGATT TCTTATGCAG CATATTTTTC TACGGTCTCT
GCTGGCACCG TGATGGATTC TGTTAAAAAA CTGCAAATTG CCGGTTATGC CACTGCGTTT
GGCGCGACGA TGGCAGCGAC AGGCGGTAAC GTTGCAACCG CAGCAACCGT TGCTCGTGAT
TACTTACCAC AACTAAATGT ATCGGCTGAG GGTATTACAA AAGCATTTGA CGTCTTGGCT
CCAGCATTGC TATCTGAAGC CGAGTTAGCA CAACTAACGG CTGTGGGTTT AAATACCTGT
GCCGGCCTTG TAACGAATAT CATGGACACC AGCTCTGCTT TAAACGAGGT GGCTACGCAA
ACGTTTGAAA CAGCCGGTCC TTTCTGTGCA GCTACTCGCA TCGAAGGTGA GGTAAAATTA
CCTTATTATT TGAGCACCAC CAATCCGTTA GGTGACTGGT GGCGCGCAAT GTGTACCAGT
GGCGCTACGA TGCAACTAAT GGGCGCTGAA ACAGTGGGCT CATTAATCCA AGCTGGGGCT
GTCGGGCCAA ATGATGAGCT GTGCCAAGTC GCATCTCAAG GGCAGTTGCG GGATTTAGAT
TTATCGTCTT TAGGTATCGA CGACCCACGC AATTTGACCA AGTTTAATCC TTTGCCTATG
GCGCAGGGAA CGAATGATGA TGATGAGTCA ACACCATTCA ACGAAGCGGG TACTGAAACG
TTAGGCGTGC AGTTTACCGT ACCTGATGAG TCAGTGATTG CCATGCTATC GGCGGCAACG
GGGGGCGCAA TTGACGTACC GACGAAACCT GAAGGTGGCT GGCCAGTCAT TATCGTTCAG
CACGGTATTA CTGGTCAAAA AGAAAATGCG TTGGTCGTCG CAGCCGCGTT CTCTCTTGCG
GGCTTTGCAA CGGTAGCTAT TGATCACCCA TTACACGGAG CTCGCGGTTT TACCTTAGCC
GATGGAACGA ACGTAAATGC GTCTACCAAT TCGCCTACGG ATTACATGAA CCTTGCAAGT
TTAATTACGG CTCGTGACAA TTTACGTCAA AGCGCGACTG ATACCCTAGG TTTGCGCCTA
GCTTTGAATG CCATAAATGA TGCTTCAGGG ATAGTGGATG TTGATACATC TAAAGTTCAT
TTCATCTCTC AAAGCTTGGG CTCTATCTCT GGTATGAACA CACTCGCTAA CGCTAATACG
CCGTTCGAGG GTGATTTTGC CCCCTTTAGC GATATGTATA ATGTAGACAC CGCCGTGTTG
AACGTGCCAT CAGGCGGCGT GGCAAATTTC TTATTTGAGT CACCTGACTT TGGGCCACTG
ATTAAAGGCT CTTTATTAGC AGCTTCATCA GAAGACTTTG CCGCCTTTTT AGGCCAATTT
GCGGCGGCCA ACGGACTTAC CGCAGAAGCG GCTATTCGCC CTGCCTTTAC CGCATTTTAT
GGTGCATTAG AAGATGCACC TAAAGCAGAG ATTGATGCTA CTTTCAGTCA GTTTGTATTT
GCGGCGCAGA CAATATTAGA TGCCGGTGAC CCCATTAATT ATGCTCAACA AATGGCGGGC
AATACACCAA CGCTAATGCA ACTTGTTGTC GGTGGTGGAG TGAATGATGA TGGTACAACG
GCGTTGACAG ACCAAGTTAA CCCTGTTGTT ACCTCATTGC CATTATCCGG CGGTATTCCC
TTATCTAAAG TGATGGGCTT AGAGCAAGTG TCGGCCACAA AACAGAGTGA TACTACGCAA
AATGGCGTTG TGTATTTCTC GGCTGGGGCG CACCAATCTT TGTTTGTGCC AACCCCGAGT
GTTGCTGCAA CGGTAGAGAT GCAGAATCAA GCAGCCAAAT ACTTCGATTC AGAAGGAAAA
GATATTGTTA TTTCAGATGA GTCTGTTGTG GCGAACTAA
 
Protein sequence
MNKLLLSASI AAVLGLTGCN GDSVADIETN TPVEKPFARV VFDPANSDLN LPNDLLMLPS 
GNFFDFTLNT EGDAVFDGGN PEHALSALDG WSTQNPFSIR VTLPTGLDID ASSVNGASIK
LFKATQALEG TSATCQAIAA VAAAPGVPCE LGEELVYGVD FVASYTNEGS GSIAVIPLKP
LASSQGHMLV VTDALLDTDG KSVKGSSSWE LARQDINTLP LATEEQLQLQ TLVNSLVDVV
IPSGIEREAI SYAAYFSTVS AGTVMDSVKK LQIAGYATAF GATMAATGGN VATAATVARD
YLPQLNVSAE GITKAFDVLA PALLSEAELA QLTAVGLNTC AGLVTNIMDT SSALNEVATQ
TFETAGPFCA ATRIEGEVKL PYYLSTTNPL GDWWRAMCTS GATMQLMGAE TVGSLIQAGA
VGPNDELCQV ASQGQLRDLD LSSLGIDDPR NLTKFNPLPM AQGTNDDDES TPFNEAGTET
LGVQFTVPDE SVIAMLSAAT GGAIDVPTKP EGGWPVIIVQ HGITGQKENA LVVAAAFSLA
GFATVAIDHP LHGARGFTLA DGTNVNASTN SPTDYMNLAS LITARDNLRQ SATDTLGLRL
ALNAINDASG IVDVDTSKVH FISQSLGSIS GMNTLANANT PFEGDFAPFS DMYNVDTAVL
NVPSGGVANF LFESPDFGPL IKGSLLAASS EDFAAFLGQF AAANGLTAEA AIRPAFTAFY
GALEDAPKAE IDATFSQFVF AAQTILDAGD PINYAQQMAG NTPTLMQLVV GGGVNDDGTT
ALTDQVNPVV TSLPLSGGIP LSKVMGLEQV SATKQSDTTQ NGVVYFSAGA HQSLFVPTPS
VAATVEMQNQ AAKYFDSEGK DIVISDESVV AN