| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2180 |
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| Symbol | |
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| ID | 4172332 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2631132 |
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| End bp | 2633741 |
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| Gene Length | 2610 bp |
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| Protein Length | 869 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638055188 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_661752 |
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| Protein GI | 109898497 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.225635 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACACGT CATTAAACAA ATTAACGAAA AGTATTCGCT ACGTTATTGC TACATCGACA
GCTGTTGCGG TTACCGCAAT AAGCCCTGTC TATGCTCAAC AAGTAAAAGA CGATAGTGCG
GAGGTAGAAA AAATTGCGGT GGTAGGGAGC CGCTCAGCAC CTCGTTCAGT TGCAGATTCT
CCAGTGCCTA TCGATATCAT CGGCGGCGAT GAGCTCGGTA AGTCAGCCTC CACTGACATG
CTTGATATGT TAGTAAGTAC GGTTCCGTCG TTTACTGCTC GCGCACAGCC TATTTCTGAT
GCCGCAACCC TTATTCGCCC TGTTAACCTA CGTGGTTTGT CTTCAGACAG TACTCTCGTA
TTAGTTAACG GTAAGCGGCG CCATCGTGCG TCTGTTATTG CATTCCAAGG TGGTGGCATT
AATGATGGCG CTCAAGGCCC AGATATTTCA GTTATCCCTA GTTCAGCGTT AAAACAGGTC
GAAGTATTAC GCGACGGCGC AGCTGCTCAG TATGGCTCTG ATGCCATAGC AGGTGTAATG
AACTTTGTTT TAAAGGATGA CGCTGACGGT GGCTCTCTAT CGGTTAAACG CGGTGAGTAC
TACGAAGGTG ACGGCGCAAC AACCACTGTA GAAGGTAATG TTGGTTTACC GTTCACTAAA
GATGGTTACG CTAACCTGAG TTTTCAGCTT AAAAACGCCG ACGCAACCAG TCGCAGTGTA
CAGCGTCCCG ATGCGGCTAA TCTAATTGCT CAAGGTAATA CTGCTGTTGG TGATCCGGCA
CAAATTTGGG GTAACCCTGA GATCAACGAC GACATTAGCC TATTTGGTAA CGTAGGGCTT
GATCTTGGCG ATGACAAGAA ATTCTACATG TTCGGTAACT ATTCTGAGCG TGATATTGTC
GGCGGCTTTT ACTACCGAAA CCCCCACAAC CGTGGTCAAG TCTATTCAAA TGATGAAGGC
GAAACGCTAT TAGTCGGTGA TGTGGCTGAG GCCGCAGGGG CAGAGCGCAC TTGTGCAACA
GTTGCTATTC CTAAAGTGAC GCTAGCTGAC GGAACGGTTG TTGACGGAAA TGTGTTAGAT
ACCGCTGCCT ATCAACAGAT GGCTGCCGAT CCTAATTGCT TCTCAATGAA TCAAATTTTC
CCTGGTGGTT ATACACCCGC GTTCGGCGGA AACATCACTG ATACCTCTTT GGTTATTGGT
GTTGAAGGCG AATTGAAAAA TGGTTTCTTA TCTGGCGCGT TCTTCGATTT GAGTGGTTCT
GTCGGTCGCA GTGAATCATC GTTTAACTTA ACAAATACTC TTAATCCTTC GCTAGGTCTT
GATACCCCAA CTGAGTTCGA TACGGGTAAA TATATCCAGT TGGAGAAAAT GTTCAATTTA
GATTTATCTA AGCAAATTGA CGTTGACAGC ATTGATTCAC TTAACTTAGC AGGTGGTCTT
GAATGGCGTG AAGAGTCATT TGAAATTGTT GCGGGTGAAG AGGCCTCTTG GAAAGCTGGT
GATTATGCAT CACAAGGGTT CAACATTGGC TCTCATGGTT TTAAAGGGTT CGGCCCTGAA
GCACAAGGCA CTAATACTCG TCGCAGTGTA GCGGCCTATA TTGACGTAGA AGCGTATATT
ACCGAAGACT TGTTGCTCGG TGCTGCGGTT CGTTACGAGG ACTTTACGAC CTTTGGCGAT
ACCACTAACT ATAAGTTGAC GGCCCAGTAT TCCGTCACTG ATGAGCTTTC TTTGCGTGCA
TCAACCAGCA CTGGGTTTAG AGCTCCTACT GTAGGGCAAG CGAATGTGGT TAATACACAA
ACGTCTATCG TTGGCGGTGA TTTGATTCAA AGTTTCTTGG CGCCACCGAC TGATACATTG
TCAGCGTTTT ATGGCGGTAA AGAGTTGTCT CCTGAAGACT CTCAAAGTTA CGCAATTGGT
GCGGTTTATC AAAGTGGGGA CTTCTTCATG AGTGCTGACT TATACAGCAT TACCGTTGAA
GATCGTATTG CCCAGTCTAG TAAAATTGAC GTAAACCCAG ATGACTACGA AGAACTAAGA
ACACTAGGTG TACAAAATCC TGAGCTTATT TCTGCTGTTA CGTATTTCGC TAATGACTTT
GATACTAAAA CCCAAGGTTT GGATTTAGTG GCTAACTACA CGCATCCAAT CTTTGAATCT
GGTGATACCA AGTTCTCGTT AGCGTACAAC TGGAATGAAA CTGAAGTCGA AAAATTCAAT
CCTGATACAA CGAGCGTAGG CAAAGTAAAA TTACTTGAAG AAGGAATTCC TCACCATAGA
GCGACATTCA CTGTATCGCA AAGCTGGGAT ACAGTGAGTG CCTTTATTCG CGTTAATTAT
TTTGGAGAGT ACTTCGCCGT TCACGCTGAT GATGCTGAAC CAGGTGGCTG GAATGAGGAC
GCCGGCAGCA GCGCAACGGT TGACGCAGAA GTAAGTTACT TTGTAACCGA CCAAATTACC
TTATCTGCAG GTGCTAGCAA CTTGTTCGAT AATGATGCTC AGGAGCTTCC AGCTAGCTCG
TTTGCGGCAG TAGGTGGTCA ATATTATGAA AGTGGACCTT TCGATTACAA TGGCGGTTTC
TACTACGTAA AAGCAAAGTA TAACTTCTGA
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| Protein sequence | MNTSLNKLTK SIRYVIATST AVAVTAISPV YAQQVKDDSA EVEKIAVVGS RSAPRSVADS
PVPIDIIGGD ELGKSASTDM LDMLVSTVPS FTARAQPISD AATLIRPVNL RGLSSDSTLV
LVNGKRRHRA SVIAFQGGGI NDGAQGPDIS VIPSSALKQV EVLRDGAAAQ YGSDAIAGVM
NFVLKDDADG GSLSVKRGEY YEGDGATTTV EGNVGLPFTK DGYANLSFQL KNADATSRSV
QRPDAANLIA QGNTAVGDPA QIWGNPEIND DISLFGNVGL DLGDDKKFYM FGNYSERDIV
GGFYYRNPHN RGQVYSNDEG ETLLVGDVAE AAGAERTCAT VAIPKVTLAD GTVVDGNVLD
TAAYQQMAAD PNCFSMNQIF PGGYTPAFGG NITDTSLVIG VEGELKNGFL SGAFFDLSGS
VGRSESSFNL TNTLNPSLGL DTPTEFDTGK YIQLEKMFNL DLSKQIDVDS IDSLNLAGGL
EWREESFEIV AGEEASWKAG DYASQGFNIG SHGFKGFGPE AQGTNTRRSV AAYIDVEAYI
TEDLLLGAAV RYEDFTTFGD TTNYKLTAQY SVTDELSLRA STSTGFRAPT VGQANVVNTQ
TSIVGGDLIQ SFLAPPTDTL SAFYGGKELS PEDSQSYAIG AVYQSGDFFM SADLYSITVE
DRIAQSSKID VNPDDYEELR TLGVQNPELI SAVTYFANDF DTKTQGLDLV ANYTHPIFES
GDTKFSLAYN WNETEVEKFN PDTTSVGKVK LLEEGIPHHR ATFTVSQSWD TVSAFIRVNY
FGEYFAVHAD DAEPGGWNED AGSSATVDAE VSYFVTDQIT LSAGASNLFD NDAQELPASS
FAAVGGQYYE SGPFDYNGGF YYVKAKYNF
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