| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2170 |
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| Symbol | |
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| ID | 4173425 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2617897 |
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| End bp | 2621745 |
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| Gene Length | 3849 bp |
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| Protein Length | 1282 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638055178 |
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| Product | ATP-dependent helicase HrpA |
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| Protein accession | YP_661742 |
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| Protein GI | 109898487 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.299088 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGTCGG ATCGGTTTCG TTTTCAACGC CGCTTTAAAC AGATTCAACG ATTCGATAAC
AAAAAGAAAA ACGAAGCCCT CGCTAAGTTG AGTAAAGATA TTGATAGGTC GGTGTTATTA
AAAGAGCAAA GGCAAGCTAA CCTTCCGAAG GTAGAATACC CAGACTTACC CGTTACTGAA
CAAAAACAGA AAATTTCAGA TGCGATCCGC GATAATCAAG TGGTGATTAT TGCAGGTGAA
ACGGGCTCGG GTAAAACAAC TCAAATTCCG AAAATTTGTT TAGAGTTAGG GCGAGGTGTA
AGTGGTTTAA TCGGCCATAC TCAGCCACGA AGACTCGCCG CTAGAAGCGT CGCTAACCGC
ATAGCAGAAG AACTACATAG CGAACTAGGA AATGAAGTCG GGTTTAAAAT TCGTTTCTCA
GATCAAGTGA GTGACCGTAC CTATGTAAAG TTAATGACAG ACGGTATTTT GCTCGCAGAA
ATTCAACAAG ATAGATTTTT AAATCAGTAT GACACCATTA TTATTGATGA GGCGCATGAG
CGAAGCCTCA ATATTGATTT TATCCTCGGT ATACTGAAAC AACTACTGCC TAAAAGACCG
GATTTAAAGT TGATCATCAC CTCAGCGACG ATCGACCCTG AGCGCTTTTC AAAGCATTTT
GATGATGCTC CGATTATTCA AGTGAGCGGC CGAACTTTCC CAGTCGAAAT GCGTTACAGA
CCATTACTAG ATGACGACGG TGAGAACGAC AGGGACCAAG CGCAAGCGAT AATTGATGCG
GTGAATGAAC TGGGTAACCA TAGCCAAGGA GACATTTTAG TCTTTCTGAG TGGTGAGAGA
GACATCCGCG ACATGGCAGA TGCACTGACA CGTCAACAAT TCCGGCACAC TGAAGTCGTG
CCACTTTACG CTAGGCTGTC TGCAGCAGAA CAAAACAAGA TATTTCAATC TCACTCGGGT
CGACGCATCG TGCTTGCCAC CAACGTCGCT GAAACATCAT TAACAGTGCC TGGGATTAAA
TACGTTATTG ACCCAGGTAC GGCCCGTATC TCACGGTACA GTGTGCGCAG TAAAGTACAG
CGATTACCAA TTGAGCCCAT TTCCCAAGCT TCCGCCAATC AAAGGGCAGG GCGTTGTGGT
CGCGTATCAG ATGGTATCTG TATTCGTTTG TACAGTGAAG ATGACTATAA CAATCGCAAT
GAGTTTACTG ATCCTGAAAT ACTAAGAACG AATTTAGCCT CTGTCATCTT ACAGATGATG
GCGCTAGGCC TTGGCAAAAT TGACGAGTTC CCCTTCGTGC AGATGCCAGA CTCACGCAGT
ATCAATGATG GTTTTAATCT GCTCGAAGAG CTTGGTGGAG TCGAGAAAAA TACGGGGCGT
TTAAACTTAA CCACCATCGG CCGGCAAATG GCGCGTTTAC CCATCGATCC TCGCTATGCC
CGGATGATTG TCGAAGCAGA AAAACTCAAT AGTATGCGAG ACGTATCTAT TATTACCGCT
GGTTTAAGCA TTCAAGACCC GCGAGAGCGC CCACAAGATA AACGGCAAGC GGCTGATGAG
AAACACCAAG CATTTGCCAA TAAAGAGTCT GACTTTTTAG GCTTATTAAC GCTTTGGTTA
GAATTTAAAG CAAAACAAGT CGAACTGACC AACAATCAAT TACGCAAGTG GTGCAAGCAA
AACTTCATTA ACTATTTACG TATGCGAGAG TGGCAAGACA TTGTAAGCCA GTTGAGAAAA
TCTATCGCAG AGCTCGGGTT TAGTATCAGC CAGGCAGATG CGGATTATCA AGCTATTCAC
CAAGCGATGG CTGCTGGATT GCTATCTCAT ATCGGCAATA AAGATAAAGA CAAGGAATAC
CTTGGCGCAC GTAACGGCAA GTTCATGTTA TTTCCTGGGT CAGGAATTGC CAAAGCGAGT
CCTAAATGGG TGATGGTTGC TGAGCTTGTG GATACATCCC GACTATTTGG TCGAATGGGC
GCAAAAATTG AACCTCAATG GCTGGAGTCA CTAGCGCCTC ATTTAATTAA ACGTAATTAC
AGTGAGCCAC ATTGGTCGAA GAAGCAAGGA GTTGTCCAAG CGTTTGAAAG TGTGACTTTG
TACGGCTTAC CTTTAGTTTC TAAACGTCGC GTTGTTTACA GCCAAATAGA CCCAGTTATC
AGTCGTGAAA TATTCATACG AGAGGCCTTG GTTAATCAAG ATACTAAGTT AAATGACGAT
TTTTTAACTG AAAACCAGTT AGAAGTGGAT GAAATTAAAG GGTTAGAGGA TAAGACACGC
CGCCGCGACT TGTTGGTGGA TGAAGAGGCG TTGGTTGATT TTTATGCTCA GCTTATTCCT
ACACATGTAT GCAGCGAGGC CAGTTTTAAG AAATGGTGGG GCAAAACTAA AAACACCCAG
CCCGACTTGC TAACCTATTC AAAGCAAATG CTGCTTAAGA ACTCACCGAC AAAGTCACAT
GCATATGATT TCCCTGAAAC GTGGCAGCAA GGCAATTTAA CTCTGCGTCT AGATTATCAC
TTCAACCCCA CGGATATAGA TGATGGTGTC AATTTATTGG TGCCGCTTTC CCTATTAAAC
CAGTTGTCTG TTGTGGGGTT TGATTGGTTA GTGCCTGGGC TACGTCACGA GCTTATCGTC
ACTCTTATTA AATCATTACC AAAACGTCTT CGACGAAACT TTGTACCCGC ACCTAACTAC
GCGGATGCTT GTTTGTCCGA TATCTCTGCG ATAGATAAGA AAGGCCAACC TATCGCTTTT
CTAAGTGCAA TCAGCCAAAA GTTAAAGCGC ATGACTGGCG TAGAAGTCGA AATAGAAGAA
TGGCAGATAG ATAGCCTACC TTTTCATCTA CGCTTTAATT TTAAAGTGCT AGACGATAAT
AACAAGGTCG TGCAACAAGG TAGGGATCTG CAGGCGTTAC AGCACCAGTT ACAGGGAAAA
GTAAAGCAGA GCCTGAGCAA AATGGCGAAA CCTGGATTAG AAAGGTCAGG CATAACTCAG
TGGGATTTTG AGCGCTTACC CACTGAATAT GTCAGCAAGC AAAGTGGATT TAATGTAAAA
GCGTACCCTG CGTTGGTGTC TGAAAAAAAT GCGGTAGCGA TAAAACTATT TGATAAGCTG
CATATGGCAC AGCAAGCGCA TCAGCTAGGA TTACGACAAT TAATTTTGTT ATCGATTCCA
TCACCTATTA AATATCTGCA TGAAAAACTG CCTAATAAAG CTAAGCTCGG TTTGTACTTT
AACCCATTCG GGAAGGTTGC TGCCCTGATT GATGATGTCA TCGCGGCCGC AACAGACGAG
CTGATAGAAA GCTACCGTGA CCTTCACGGT GACATTCGCA CGCCAGAAGC CTTTCACGCC
TGTAGCGAGC ATGTTCGCAG CGAAATAAAT GATAGCGTGT TAACCATCGC CCAGAAAGTT
GAAACCGGCC TAACCAAAGC GCACCAAATC AAGAAGAAAA TGAAGGGTAA TGTGCCGATG
GCGATGATCA ATGCTTATGG GGATATAAAG CAGCATTTAG ACAGCCTAGT ATTCAACGGG
TTTGTAAGTG ATATCGGTGC TCGACGTTTG AGCGATTGGC AACGCTACAT TGAAGGGATC
GCCAGACGAA TCGAAAAACT ACCTATCGAC CCAACAAAAG ACCGCTTGCA TCAATTGAAC
GTAGAAAAAG TGCACGGTGA GTATACAAAG CGGTTGCAGA AAATCCCTGC CGGCGTACCT
ATACCTGATG AATTAAAAGA AGTTCGCTGG ATGATAGAAG AGCTTAGAGT GTCATTCTTT
GCCCAGCAAT TAGGCACAGC TATGCCGATA TCAACCAAAC GGATTATCAG CCAATTAGAC
GCTAATTAG
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| Protein sequence | MASDRFRFQR RFKQIQRFDN KKKNEALAKL SKDIDRSVLL KEQRQANLPK VEYPDLPVTE
QKQKISDAIR DNQVVIIAGE TGSGKTTQIP KICLELGRGV SGLIGHTQPR RLAARSVANR
IAEELHSELG NEVGFKIRFS DQVSDRTYVK LMTDGILLAE IQQDRFLNQY DTIIIDEAHE
RSLNIDFILG ILKQLLPKRP DLKLIITSAT IDPERFSKHF DDAPIIQVSG RTFPVEMRYR
PLLDDDGEND RDQAQAIIDA VNELGNHSQG DILVFLSGER DIRDMADALT RQQFRHTEVV
PLYARLSAAE QNKIFQSHSG RRIVLATNVA ETSLTVPGIK YVIDPGTARI SRYSVRSKVQ
RLPIEPISQA SANQRAGRCG RVSDGICIRL YSEDDYNNRN EFTDPEILRT NLASVILQMM
ALGLGKIDEF PFVQMPDSRS INDGFNLLEE LGGVEKNTGR LNLTTIGRQM ARLPIDPRYA
RMIVEAEKLN SMRDVSIITA GLSIQDPRER PQDKRQAADE KHQAFANKES DFLGLLTLWL
EFKAKQVELT NNQLRKWCKQ NFINYLRMRE WQDIVSQLRK SIAELGFSIS QADADYQAIH
QAMAAGLLSH IGNKDKDKEY LGARNGKFML FPGSGIAKAS PKWVMVAELV DTSRLFGRMG
AKIEPQWLES LAPHLIKRNY SEPHWSKKQG VVQAFESVTL YGLPLVSKRR VVYSQIDPVI
SREIFIREAL VNQDTKLNDD FLTENQLEVD EIKGLEDKTR RRDLLVDEEA LVDFYAQLIP
THVCSEASFK KWWGKTKNTQ PDLLTYSKQM LLKNSPTKSH AYDFPETWQQ GNLTLRLDYH
FNPTDIDDGV NLLVPLSLLN QLSVVGFDWL VPGLRHELIV TLIKSLPKRL RRNFVPAPNY
ADACLSDISA IDKKGQPIAF LSAISQKLKR MTGVEVEIEE WQIDSLPFHL RFNFKVLDDN
NKVVQQGRDL QALQHQLQGK VKQSLSKMAK PGLERSGITQ WDFERLPTEY VSKQSGFNVK
AYPALVSEKN AVAIKLFDKL HMAQQAHQLG LRQLILLSIP SPIKYLHEKL PNKAKLGLYF
NPFGKVAALI DDVIAAATDE LIESYRDLHG DIRTPEAFHA CSEHVRSEIN DSVLTIAQKV
ETGLTKAHQI KKKMKGNVPM AMINAYGDIK QHLDSLVFNG FVSDIGARRL SDWQRYIEGI
ARRIEKLPID PTKDRLHQLN VEKVHGEYTK RLQKIPAGVP IPDELKEVRW MIEELRVSFF
AQQLGTAMPI STKRIISQLD AN
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