| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2167 |
|---|
| Symbol | |
|---|
| ID | 4173422 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 2615075 |
|---|
| End bp | 2616058 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638055175 |
|---|
| Product | zinc-binding alcohol dehydrogenase |
|---|
| Protein accession | YP_661739 |
|---|
| Protein GI | 109898484 |
|---|
| COG category | [C] Energy production and conversion
[R] General function prediction only |
|---|
| COG ID | [COG0604] NADPH:quinone reductase and related Zn-dependent oxidoreductases |
|---|
| TIGRFAM ID | [TIGR02824] putative NAD(P)H quinone oxidoreductase, PIG3 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAATTTA TCGATTATGA AGAAGGGACG GCAACGGACA CGCTTTTTGT TAATGATACT
ACAAAACCTA CCCTCAAACA GGGGCAAGTG TTAGTAAAGG TACACAGCTT TGGTATTAAC
CGCGCTGATA CACTACAGCG CCAAGGTAAA TACCCAGCAC CAAGAGGGGA AAGTCCAATT
CTTGGTCTTG AGGTATCAGG GGAAATTGTA AGTCTTGGTA TATCTGCTGA TAACGAGTCT
TCCCGTTGGC AAATAGGCGA TGAAGTCTTT GCGCTTGTGG CTGGCGGCGG GTATGCCCAA
TATGTGGCGG TCAATTCTGA ACACTTAATG CCTAAGCCTA AAAACGTGGA TATGCCGAGT
GCCGCTGGTA TCGCCGAGGT TTTCTTAACG GCATACCAAA GTTTGTTTCA AGTGGGCGGA
TTAAAAACTG GGCAGCGGGT TCTTATACAT GCTGGAGCGA GTGCTGTGGG TCTTGCCGCG
ATTCAATTAG CAAAAGCAGA TGGTTGTCAT GTCAGTGTTA CCGCATCAAC TGAGAAAAAA
CTTGCGGTAT GCGAAAAGTA TGGCGCCGAT CGACTGATAA ATTACAAAAC TCAAAATTTT
GCTGAATGTT TCGAGCAAGG CGGAGTCGAC GTTATTATTG ATTTTGTTGC AGGGGATTAT
TTGAATCGAA ACTTAAAAAT CCTCAACGCT GATGGAACGA TAGTGTACTT AGCTATGTTG
GCCGGTCGCT ATGCCGACAA AGTAGACATG GCCCTGATGC TTGCGAAACG CGCCACCATC
ACAGGCTCTA CACTGCGAAG CCGGAGCGAC GAATACAAAA GCGTTTTAAT ACATGACTTT
TGTCACAGAT TTTTGGCTGA TTTTGACAAT GGTGCTTTAA GACCTGTTAT CGACACCCAA
TATAACGTAA AAGATATTGC TTTGACGCAC GAACGCCTTG AACGAAATGA CACCATGGGT
AAATTGGTTG TTAGTTGGAA TTAA
|
|---|
| Protein sequence | MQFIDYEEGT ATDTLFVNDT TKPTLKQGQV LVKVHSFGIN RADTLQRQGK YPAPRGESPI
LGLEVSGEIV SLGISADNES SRWQIGDEVF ALVAGGGYAQ YVAVNSEHLM PKPKNVDMPS
AAGIAEVFLT AYQSLFQVGG LKTGQRVLIH AGASAVGLAA IQLAKADGCH VSVTASTEKK
LAVCEKYGAD RLINYKTQNF AECFEQGGVD VIIDFVAGDY LNRNLKILNA DGTIVYLAML
AGRYADKVDM ALMLAKRATI TGSTLRSRSD EYKSVLIHDF CHRFLADFDN GALRPVIDTQ
YNVKDIALTH ERLERNDTMG KLVVSWN
|
|---|
| |