| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2139 |
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| Symbol | |
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| ID | 4173394 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2588568 |
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| End bp | 2589332 |
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| Gene Length | 765 bp |
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| Protein Length | 254 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638055147 |
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| Product | short chain dehydrogenase |
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| Protein accession | YP_661711 |
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| Protein GI | 109898456 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAACAG AATTATTTGA TCTAACTGGC AAAGTTGCCC TGGTAACCGG TGCAAGCCGG
GGTATCGGTG AGTCTATTGC TAGATTACTG GCCACTTACG GCGCACATGT GATTGTATCA
AGCCGCAAGT TAGACGGTTG TGAAGCGGTT GCTAAAAGCA TTCGCGATTC AGGTGGTAAA
GCTACTGCGA TGGCATGTCA TGTAGGTGAA ATGGCGCAAA TAGACGCCAC GTTTGACGCT
ATCAAGAAAG ACTTTGGGCA ATTGGATATA TTAGTGAATA ACGCTGCAGC TAATCCATAT
TTCGGTCATA TATTAGATAC TGACTTAGCG GCTTATGAAA AGACGGTAGA TGTGAACATT
AGAGGCTATT TCTTTATGTC TATCGCCGCC GGAAACATAA TGAAAGAGCA GGGTGGCGGG
GTTATTCTCA ACACAGCATC GATCAACGGT ATTTCTCCAG GCAATATGCA GGGAATTTAT
TCTGTAACGA AAGCTGCGGT GATCAGCATG ACTAAGGCAT TTGCAAAAGA GTGCGGCTCG
CTAAACATTC GAGTGAACGC ATTACTGCCT GGTTTAACCG AAACGAAATT CGCATCGGCT
TTGACATCCA ATGACAAAAT TCTTAAACAA GCTTTGATGA CGATCCCATT AGGACGTGTT
GCTCAGCCTG ACGAAATGGC TGGAACCGTA TTGTACCTGG TATCTGATGC ATCTTCATAC
ACGACAGGCA CAACAGTCAC AGTGGACGGG GGGTACTTAG CCTAA
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| Protein sequence | MKTELFDLTG KVALVTGASR GIGESIARLL ATYGAHVIVS SRKLDGCEAV AKSIRDSGGK
ATAMACHVGE MAQIDATFDA IKKDFGQLDI LVNNAAANPY FGHILDTDLA AYEKTVDVNI
RGYFFMSIAA GNIMKEQGGG VILNTASING ISPGNMQGIY SVTKAAVISM TKAFAKECGS
LNIRVNALLP GLTETKFASA LTSNDKILKQ ALMTIPLGRV AQPDEMAGTV LYLVSDASSY
TTGTTVTVDG GYLA
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