| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2135 |
|---|
| Symbol | |
|---|
| ID | 4173390 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 2583926 |
|---|
| End bp | 2585233 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638055143 |
|---|
| Product | DEAD/DEAH box helicase-like |
|---|
| Protein accession | YP_661707 |
|---|
| Protein GI | 109898452 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTTG CCGATTTAGG CTTATCCCCC GCAATTTTGT CTGCCGTTAC AGCGAAAGGC
TACACAGACC CATCTCCAAT TCAAGCACAA GCCATACCTG CCATATTAGA AGGCAAGGAC
ATCATGGCAG CAGCACAAAC CGGTACAGGT AAAACAGCGG GCTTTACTCT GCCTTTACTC
GAATTGCTGA ATCGTGGAAC ACATGCACGT GGAAACCAAG CTCGTGCATT AGTGTTAACT
CCTACGCGTG AACTTGCAGC GCAAGTCGCT GCCAGTGTGG TTGACTATGG CAAGGATCTT
CCATTGCGCT CAGCTGTTGT GTTTGGTGGT GTTGGCATCA ACCCACAGAT GATCAAGTTG
CGCAAAGGCG TCGATATTCT AGTCGCCACA CCGGGGCGCT TGCTTGACCT GTATAACCAG
AATGCGGTTA GATTTGACGA TTTAGAAATT TTGGTGCTGG ATGAAGCGGA CCGTATGCTA
GATATGGGCT TTATTCACGA CATCAAAAAG GTGCTAAAGC TGCTACCAAC GAAACGTCAA
AACTTACTTT TTTCAGCCAC CTTTTCAGAT GATATACGTG CATTAGCGAA AGGGCTTGTG
AATAACCCGG TCGAAGTATC TGTTTCCCCG CCTAATACAA CAGTAGAAGC CGTGGAACAG
TTTGTGTGCC CCGTTGATAA GAATCAAAAG ACACCCGCTT TGATTCGCAT GATTAAAGAC
AATGATTGGC AACAAGTGTT GGTATTTAGC CGCACTAAAC ATGGTGCGAA TCGGATCGCC
AAGCAGCTTG AAGCGCGTGG TATTACCTCA GCGGCTATTC ACGGTAACAA AAGTCAAGGC
GCTCGTACAA AAGCGCTAGC CGAGTTTAAA AGCGGTAAAG TGCGTGCATT AGTGGCGACC
GATATTGCTG CTCGTGGTCT AGATATCAGT CAATTACCCC AGGTAGTCAA CTATGACCTA
CCCAATGTAG CAGAAGATTA CGTTCACCGT ATCGGTCGAA CAGGCCGTGC TGGTGCAAGT
GGACAAGCTA TCTCACTTGT CACCGCGGAT GAGTTTTCCT TGCTGGCTGA TATTGAACGT
TTTACTAAGC AAATCATTCC ACGCAAGGGG ATTGAAGGGT TTGAGCCTGT TCATGCATTA
CCTGAATCAA GATTAGATTC GCGCCCTATT AAACCTAAAA AGCCTAAAAA ACCTCGAGTT
CAGCACCGAG ATGGTCAACG TTCTGGTGAT AATGCTCGTG GGCACCACTC TGGTAACCGT
CGGGGTAATG GGCCTAAAAA TGCCAGCCCT CGCCGCTCAG CGTCTTAA
|
|---|
| Protein sequence | MSFADLGLSP AILSAVTAKG YTDPSPIQAQ AIPAILEGKD IMAAAQTGTG KTAGFTLPLL
ELLNRGTHAR GNQARALVLT PTRELAAQVA ASVVDYGKDL PLRSAVVFGG VGINPQMIKL
RKGVDILVAT PGRLLDLYNQ NAVRFDDLEI LVLDEADRML DMGFIHDIKK VLKLLPTKRQ
NLLFSATFSD DIRALAKGLV NNPVEVSVSP PNTTVEAVEQ FVCPVDKNQK TPALIRMIKD
NDWQQVLVFS RTKHGANRIA KQLEARGITS AAIHGNKSQG ARTKALAEFK SGKVRALVAT
DIAARGLDIS QLPQVVNYDL PNVAEDYVHR IGRTGRAGAS GQAISLVTAD EFSLLADIER
FTKQIIPRKG IEGFEPVHAL PESRLDSRPI KPKKPKKPRV QHRDGQRSGD NARGHHSGNR
RGNGPKNASP RRSAS
|
|---|
| |