Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_2133 |
Symbol | |
ID | 4173388 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 2579054 |
End bp | 2580010 |
Gene Length | 957 bp |
Protein Length | 318 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638055141 |
Product | RluA family pseudouridine synthase |
Protein accession | YP_661705 |
Protein GI | 109898450 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCACAG ATACTACATT TCAGAAAGTC CAGTTTATCG ATATCGAGCC CGACCTAGAG GGTCAGCGCA TCGATAATTT TTTACGTACC TTACTCAAAG GGGTACCTAA GAGCCTTATT TATCGCATCG TGCGTAAGGG CGAAATTAGG GTTAATAAAA AGCGCGTTAA GCCTGAATAT AAGCTTCAAG CCCATGACCA GTTACGCATT CCGCCCATAC GTGTGTCTGA GCCCAATGAG GCGCCTTCCA CTAAATTGGA CAAAGTGGCT TCACTTGAGT CTCATATTTT GTTCGAAGAT GATTTACTTA TCGTGTTAAA TAAGCCATCA GGAATGGCAG TGCATGGAGG CAGTGGTTTG AGCTTCGGGG TGATTGAAGC GCTTCGTGCA TTGCGCCCTC AAGCGCGATT CTTAGAATTA GTTCATCGTT TAGACCGAGA CACATCAGGT TGTTTAGTTA TCGCTAAGAA ACGCTCAGCA CTTAAAAACT TGCATGAGCA ACTTCGTGAT AAAAAAATGG ATAAGCGCTA TCAAGCATTA GTAGTAGGTG AATGGCCCGA AAATCGTTAT AAAGTCAATG CACCATTGTT AAAAAACATT CTTAAATCGG GTGAACGTTT AGTGTCGGTG GATACTGAAG GTAAACCGTC TGAAACACGT TTTCGTGTAC TCGATAGATT TTCAGGCGCC ACGCTAGTTG AAGCCTCACC TATTACAGGC CGTACCCACC AAATACGTGT ACATTGCTTG CATGCAGGTC ATCCCATTGC TTGCGATGAC AAATATGGTG ATTCAGAGTT TACTGGGCTG ATGAATCAAA AAGGGTTGAA GCGTTTATTC TTGCATGCGT ACTCCTTAGC GTTTATTCAC CCAAAGACTG AAGACAGAGT CAGTTTTCAA GCCCCACTCG ATAAGCAATT AAACAGAGCG TTAAGCGTGT TGGAAATTCG TAGTTAA
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Protein sequence | MITDTTFQKV QFIDIEPDLE GQRIDNFLRT LLKGVPKSLI YRIVRKGEIR VNKKRVKPEY KLQAHDQLRI PPIRVSEPNE APSTKLDKVA SLESHILFED DLLIVLNKPS GMAVHGGSGL SFGVIEALRA LRPQARFLEL VHRLDRDTSG CLVIAKKRSA LKNLHEQLRD KKMDKRYQAL VVGEWPENRY KVNAPLLKNI LKSGERLVSV DTEGKPSETR FRVLDRFSGA TLVEASPITG RTHQIRVHCL HAGHPIACDD KYGDSEFTGL MNQKGLKRLF LHAYSLAFIH PKTEDRVSFQ APLDKQLNRA LSVLEIRS
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