| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2124 |
|---|
| Symbol | |
|---|
| ID | 4173379 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 2572049 |
|---|
| End bp | 2573008 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638055132 |
|---|
| Product | 3-oxoacyl-(acyl-carrier-protein) synthase III |
|---|
| Protein accession | YP_661696 |
|---|
| Protein GI | 109898441 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0332] 3-oxoacyl-[acyl-carrier-protein] synthase III |
|---|
| TIGRFAM ID | [TIGR00747] 3-oxoacyl-(acyl-carrier-protein) synthase III |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0114121 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTCTA GAATAATTGG TACTGGTAGT TATTATCCAA GCGACGTGCG CACGAACGCC
GACTTATCCC TCATGGTGGA TACGTCAGAC GAATGGATAA CAGATCGCAC TGGTATCAAA
GAGCGCCGCA TTATCGGGGA GCATGAAACC GCTGCCACTA TGGGCTTTGA GGCAAGTAAA
AAAGCACTGG AAGCAGCCGG TATAGACGCC AAGTCATTAG ACATGATTGT ATGTGCCACA
ACCAGCGGAC GTTACTCGCT ACCCAGTACA GCCTGTGAGA TCCAAAAAGC GTTAGACGTC
GATGGCATTC CTGCATTTGA CGTAGCAGCT GCTTGCGCCG GTTATTGCTA TGCATTAAGC
GTGGCTGATC AGTACATTAA ATCAGGCATG GCAAAACGCA TTTTGGTCGT AGGAACTGAT
TGCCTAAGTC GCATGATCAG CCCAGAAGAC CGCACTATGG TAATTTTATT TGGTGACGCT
GCAGGTGCAA CAATTATCGA AGCGAGCGAA GAGCCTGGCA TATTATCCAC CCATATCCAT
GCTGCAGGGT CATACGGTGA TTTATTGGCC ATTGGTAATC CAACTCGTGG GGATGAATCA
TCCATCCACG AAAACTGGGG CTCTATGAAA GGCAATGAAG TATTCCGCGT TGCTGTGACA
AAGTTAAGTG AAATCGTTGA AGAAACCTTA GCCGCCAATA ATATGCAGAA ATCTGATTTA
GATTGGCTCG TTCCTCATCA GGCTAACTTC CGAATAATTA AAGCCACGGC GAAAAAATTA
GATATGTCGC TTGATCAAGT GGTTATAACA CTTGAGCGCT ACGGTAATAC GTCAGCGGCG
ACGGTGCCAA CGGCCTTAGA TGAAGCAATT CGAGATGGGC GTATCAAGAG AGGGCAAAAC
CTCCTATTAG AAGCCTTCGG TGGTGGTTTC GCCTGGGCAT CTGCTTTAGT GCGATATTAA
|
|---|
| Protein sequence | MNSRIIGTGS YYPSDVRTNA DLSLMVDTSD EWITDRTGIK ERRIIGEHET AATMGFEASK
KALEAAGIDA KSLDMIVCAT TSGRYSLPST ACEIQKALDV DGIPAFDVAA ACAGYCYALS
VADQYIKSGM AKRILVVGTD CLSRMISPED RTMVILFGDA AGATIIEASE EPGILSTHIH
AAGSYGDLLA IGNPTRGDES SIHENWGSMK GNEVFRVAVT KLSEIVEETL AANNMQKSDL
DWLVPHQANF RIIKATAKKL DMSLDQVVIT LERYGNTSAA TVPTALDEAI RDGRIKRGQN
LLLEAFGGGF AWASALVRY
|
|---|
| |