| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2112 |
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| Symbol | |
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| ID | 4173791 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2558550 |
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| End bp | 2560994 |
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| Gene Length | 2445 bp |
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| Protein Length | 814 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638055120 |
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| Product | Pyrrolo-quinoline quinone |
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| Protein accession | YP_661684 |
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| Protein GI | 109898429 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4993] Glucose dehydrogenase |
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| TIGRFAM ID | [TIGR03074] membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTTCTT CTTCAAACCG ACGCATATCT AATTGGCCGC TGCGGATGTT TTCAGTGGTT
AGCTTTCTCA TCGGACTCTA TTTAGCAATA GGTGGCGTTT GGTTAGTCGC CGAAAACGGC
TCTTATTACT ACGCTATCGC AGGCGGAACT TTAATATTAA GTAGTTCCTT ACTCTACTTT
AAGCAACGTT TAGGCTTGTG GGTTTTTACT CTGCTCTTTT TCGGTACGCT AGGGTGGACT
ATTTGGGAGT CAGGCACAGA TTATTGGCGA TGGGTTCCTC GTATGGGCGT GCCTGTAGTC
CTTTGTTTTG TTCTCGCGTT GTTACTGCCT AGTCTGGGGT TTTCGAAACG CGCGAGCCTT
TCTCTTGCAG GGGCATTCGC GGTAATTTTT GTTGGCGCGT TTAGTATGGC TTTCGTACCC
ACAGGCTGGA CTCACAATGC CATGGCTCCT CAAGCAGGAA GTAGCTTGAT CAAGCTTGGC
AACCAAAACG GCATAAACGA TATTAGTGCT GATGACTGGC CCGTGTATGG TCGAGATAAC
CATGCCAGTA GGTATTCACC TGTGACCGAT ATAACACCTG AAAACGTCAC ATCTTTAAAA
AAAGCATGGC AATACAGGAC AAAAGACATC CCCTCTAAAC GCTACGGCGC TGAAACGACA
CCTATTAAAA TTGATGACAA ACTTTACTTG TGTACCGCAA GGAATAAATT AATCGCCTTG
AATGCACAGA ATGGCAAAGA GATATGGCGC TATGACCCAA AAGTAGCTGA CGAAGACATA
CCCTATACTG CAGCATGCCG CGGTGTAGCT TATTATAAAG TACCTCCCAC TGAGGAAGTT
CATATTGAGA AACGAAACGA AAACAGTATG AACGCCATTA CAGACGGCTT ACTAGCGTGT
CGCGAAAGGA TCATTAGTGG CACGTTAGAC GGGAGGATCA TAGAAGTAGA TGCGCAAACA
GGTAAACCTT GTTCTAACTT CGGGAATAAA GGTGAAGTTG ATATCAAGGA ACATATGGGC
AAAACCCCCA GTGGCTTTGT TGCTATTACG GGTGTTCCAG TGATTGTTAA AGGTGTGATC
ATCACTGGGC ACCAAGTTCT AGATGGACAA AAACGTTACG CACCATCAGG CGTGATCAAA
GGATTTGACG TACAAACCGG AGAACTTCGT TGGGCGTGGG ACATGGTCAA ACCTAATATT
GATAAGTTAC CCCCTGCAGG AGAAACATAT ACACGAGGCA CACCCAATAT GTGGACCTCA
GCTACGGGTG ATAACGATTT AGGGTTAGCG TATTTACCCA TGGGTAATTC ATCTGCCGAT
TACTGGAGTA GTTCGCGCAC TAAAGCAGAA CTAAAATATG CCACGTCCCT CGTTGCCATG
AACGTAAATA CCGGTAAACC AGCGTGGTCA TTTCAAACAG TACACAAAGA CGTTTGGGAC
TACGACTTAG GCTCACAAGT TAGCTTAATT GAATTCCCTA CCAATAATGG TCAGGTTCCA
GCATTAGTGC TAACGAGCAA ACAAGGGGAC ATTTACATAC TCAATCGTGA AACCGGCGAA
GTGCTAACGG GTGTTGAGGA GCGCACAGTA CCTACCGGGG GAGTGTTACC GGAGTTGCGA
TCTGACACGC AGCCATTTTC AACATTTCAT ACTCTACGTA AGCCAGATCT CACCGCTAAA
GACATGTGGG GGGTCACTAT GTTCGATCAA CTGGCATGCC GTATTCAATT TCAAACCGCT
AGTTATCATG GTATTTACAC GCCACCAACC ACACAACAGC ATTGGATTGA ATACCCAGGA
TATAACGGCG GATCAGACTG GGGAAGTGTT GCCATCGACC CGCAAAGAGG TGTGTTGATT
GCAAATTACA ATGATATGCC AAACTACAAC CGACTCGTTT CGCGTGAGGA AGCCAATGAA
AAAGGGTGGA AACCGAGAGA CGAAATGGAT CATGATGATG GAGGAGCCGA AGGTGCTGGA
GACCCTCAGC AAGGAACCCC CTACGCAGTT GATGTGAATG CAGGGTGGCG TTTGCCTTTG
ACTGGACTAC TGTGCAAACA ACCACCCTAC GGTGGGATAC GAGCTATTAA CCTAGAAAAT
GGAAAAACCT TATGGGATCG TCCTCTGGGA ACCGCTCGCA ACAATGGTCC CTTCGGTATT
GCATCGGGAT TACCAATAAC CATAGGCACG CCGAACAATG GTGGCAGCGT GGTGACTAAA
AGCGGTTTGA TATTCATAGC GGCAGCGACG GATAACCTTA TCCGCGCTAT TGACATCAAT
ACCGGGCAAA CAGTGTGGCA AGACGAGTTA CCCGCTGGCG GTCAAGCGAA CCCAATGATG
TACCGAGAAA ATGGTAAAAG TTACTTGGTT ATCGTCGCTG CGGGGCATCA TTTTATGGAA
ACGCCTCCAG GGGATTATGT CATCGCTTAC GCACTAGATG AATAA
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| Protein sequence | MSSSSNRRIS NWPLRMFSVV SFLIGLYLAI GGVWLVAENG SYYYAIAGGT LILSSSLLYF
KQRLGLWVFT LLFFGTLGWT IWESGTDYWR WVPRMGVPVV LCFVLALLLP SLGFSKRASL
SLAGAFAVIF VGAFSMAFVP TGWTHNAMAP QAGSSLIKLG NQNGINDISA DDWPVYGRDN
HASRYSPVTD ITPENVTSLK KAWQYRTKDI PSKRYGAETT PIKIDDKLYL CTARNKLIAL
NAQNGKEIWR YDPKVADEDI PYTAACRGVA YYKVPPTEEV HIEKRNENSM NAITDGLLAC
RERIISGTLD GRIIEVDAQT GKPCSNFGNK GEVDIKEHMG KTPSGFVAIT GVPVIVKGVI
ITGHQVLDGQ KRYAPSGVIK GFDVQTGELR WAWDMVKPNI DKLPPAGETY TRGTPNMWTS
ATGDNDLGLA YLPMGNSSAD YWSSSRTKAE LKYATSLVAM NVNTGKPAWS FQTVHKDVWD
YDLGSQVSLI EFPTNNGQVP ALVLTSKQGD IYILNRETGE VLTGVEERTV PTGGVLPELR
SDTQPFSTFH TLRKPDLTAK DMWGVTMFDQ LACRIQFQTA SYHGIYTPPT TQQHWIEYPG
YNGGSDWGSV AIDPQRGVLI ANYNDMPNYN RLVSREEANE KGWKPRDEMD HDDGGAEGAG
DPQQGTPYAV DVNAGWRLPL TGLLCKQPPY GGIRAINLEN GKTLWDRPLG TARNNGPFGI
ASGLPITIGT PNNGGSVVTK SGLIFIAAAT DNLIRAIDIN TGQTVWQDEL PAGGQANPMM
YRENGKSYLV IVAAGHHFME TPPGDYVIAY ALDE
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