Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_2104 |
Symbol | |
ID | 4173783 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 2548103 |
End bp | 2551231 |
Gene Length | 3129 bp |
Protein Length | 1042 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638055112 |
Product | multi-sensor hybrid histidine kinase |
Protein accession | YP_661676 |
Protein GI | 109898421 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGCAGG CGATTCCTCC TCTTCGTAGT CAATTTAAAT TTCATAAGCA TGTACTACCC ATAACGTTAG TGGCTATTTT GCTCCTATTG GCCAGCGCAG TGGCGGTTTT CGAATTTCAA CTAAGCCAGT CTGTTACAGA TGAGTTAAAG AGCACTCTGT CTGCAGCGGG CGATCAAATC AATGCACAGG CTCAAGAGGA CATCGAAAAT TATCGACAAG ATTTACGCTT TCTGCACGCG ACTCCACCAG TCAGTGGGTT ACCCAGAGCA TTGGAACACA ACGGTGTTGA TCCGCTCGAC AACACTACAT CTGCCCAATG GCGTCAACGC TTGGAAATGA TCTTTTCTGC TTTTTTAACC AGTAACCCTG AGTACGATCA AATAAGGGTG ATAAGCGCTG ATAAGTCCGC CATGGAGTTA GTGAGGGTTG ATAGAGTGGC CGGTAATATT GAAGTAGTGT CACCAGAGCA ATTGCAAAGT AAACGGGCCA GTGAGTACGC CCAAAAGAGC GCAGCTTTGT CAGAAGGTGA AATTTACATG TCGCGCATTT CGCTTAACAA AGAGTATGGC AAACTGGATT ATCCATATCG ACCTATGTTG CGATTATCGC TGCCGATATT CGACGATAGT GGTAAACGCT TTGGTTTCCT TATTGTTAAC ATTAATACCT TGCCGCTGTT TAGCTCGTTG AGCAATACGT TGGACTCGCC AAACTTTCTA ACGTTAACTG ACAGTGATGG ATTTTTTCTT ATCACTCCCG ATGAACAATA TCAGTACAGT CACGACCTCT CGCCGGAATT TAACTGGAAC TCAGTATTTA GTGTTACAGA AAACATCTCA CATCGATTTG CACAAATCCG CTATCGCAAT AAAGAAGGTG ATGTTTTTTA CGTATTAGAT CAGAAAGTGA CGCTCAATGA CGATGTGGAT GGTGGCTTTC TTCAAGCTAA GTTGATTGCA CCAGCGCGTT TCGTTCACGC CATAGAAACA ACCAGAAGAA CCACGGTTTA TGCTTTTTTA TTCAGCGCGA CAATTGTCAT GTTGATTGTG CTCGCCTTTT TTAATCGCAG TGCAAACAAA AGCAAACAGC TAGCAGATGC TCGCGCCGAG TCAGCTGCGA TCGTCAGCGC CTCTAAAGAT GCGATTATCA GTGTTGATCT GACGGGTAGG GTAAAGAGCT GGAACAATGC GGCCAAGGGG TTACTTAGCT TAAGTGCTGT AGATGTGATT GGCAAAACCT TGATGGAACT TCGGGTATTT GATGACATTG AATTGAGCGA TATATTTGAG CGGCTGTCGA ATAAACACCG CCAATTGAAT ATTGAAACGC AAATTGAATC ACAAGAAAAT TCACCAATAT TTTTAGCGCT TTCATTTTCT CCTATTGCGA ATAGCGAAGA CCGGATCGAA GGCATCGCTA TTATTGCCCG GGATGTGACT CAAGAGCGCA TTGCAGATGA AAAAATAAAA CAGGCTAACG CTGAACTTGA GGAAAAAGTC GCCCTTCGCA CAGTAGAATT GCAAAAAGCC AGCGGCATCA AAAGTGCGTT TATTTCCAAC ATTAGCCATG AAATGCGAAC GCCCCTCAAT GGGATCATAG GCACATTAAA CTTGGTTAAA CGTGAGCACT TATCTGAAAA CCAGCAGCGA TATATTGAGA TGACGGAAGT CAGTGTCAAT ACGTTATCGA CGCTGGTAAA TGACGTTCTA GATCTGTCAA AAATTGAAGC GGGCAAGTTA GATTTAGATA TTAAGCCTTT CAATCCAGTA AATTTAATTG AGAGTCTGTG CGGCAGTATG GCGGTCAAGG CTCAAGAAAA AGGCCTAGAA TTTATCATTG ATGTGTCAGC CCTAAATTAC CAGTCAATGG TTAGCGATCC TCATCGTTTT TCACAGATTC TGACTAATTT AGTCAACAAC GCGATTAAAT TTACTGAAAC GGGATACATA AAAGTATCCG CTCATACTGA ACTTGTGAAG GACAAGGTAC ATTTACATTG CGCTATCGCG GATTCAGGAG AAGGAATCGC TAAAGAAAAC CAGGACAAAC TTTTCAGCGC TTTTTCGCAA GCAGACAGTA GCGTTGCCTC GAAGCATGGG GGTACGGGGT TAGGATTATC TATTTGCCGG CAATTAGTCA CTTTATTAAA AGGTGAGGTG AATTTTACGT CACAGAAAAA CCAAGGAAGC GTATTTTATT TTTCTATCAG CGCAGATGCC AATTTGTGTC AATTATCACC ACCTTCCACT TGCTTAGCAA ATATCAGCAC GGCGGTGTTT ATTGAGCATA AAGCGCTATA TCAAAGCACT TGCCAGATGA TCGAGGCCTT GGGTGGAACG ATAACCCCTG CTGAGAGTTT CGATAAAATG TTTGCTGCTG AGATGCCTAG CACTTGGTCA GAGCCGCGAG TAGATTATAT TGTGATTGAC CAGCAACATC CTGACTTAAT GGCGCTGGAT GATAAGTGGC TAGAATGTAT CGCCATAGAT GATGGAAGCG CTAAAGTGGT TTTACTTAAA CGTGACGGTG AGCCCACCGC GTGGTTGAAA AATATCAAGC CAACCGTGCT GACTAAACCA ATTTTGCGTA CTGAATTTCT GCAAAAAGTG ACACGGTTAA ATACCAATTC TTCGAGTATT GAGGCTGCAA GTGTAAACCG CCCCCCAGAG ATTAACGGCC AGATTGAAAA CCCTCCTGGT GATTTTGAGA AAATAAAAGG GGCTCGGGTA CTGGTGGTGG ATGACAACGA AATAAATGTT GAAGTGGCCA AAGGCGTGCT GTCGAGATTG CCTGTGACCT TACTTCAAGC GACAAATGGC AAAGAAGCCT TACAACAACT GATATTGGCC GAGCGCAGGA ATGAAGTCAT TCACTGCGTA CTAATGGATT GCCAAATGCC CATCATGAAT GGATATGAGG CCAGTCAGCG TATTCGGAAA GGCGAAGTAG GGGAGCTGTA TAAAAATATT CCTATTATTG CCATGACAGC TAACGCAATG TTAGGCGAGC GAAATAAGTG CTTAAGTGCA GGCATGGATG ACTACTTAAC AAAACCCGTC AACGAAGACA TTATGCAAGA AAAAGTCACT AAGTGGACAT TGTCGGTTTA TCAGGCACCT CAACGTTAA
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Protein sequence | MAQAIPPLRS QFKFHKHVLP ITLVAILLLL ASAVAVFEFQ LSQSVTDELK STLSAAGDQI NAQAQEDIEN YRQDLRFLHA TPPVSGLPRA LEHNGVDPLD NTTSAQWRQR LEMIFSAFLT SNPEYDQIRV ISADKSAMEL VRVDRVAGNI EVVSPEQLQS KRASEYAQKS AALSEGEIYM SRISLNKEYG KLDYPYRPML RLSLPIFDDS GKRFGFLIVN INTLPLFSSL SNTLDSPNFL TLTDSDGFFL ITPDEQYQYS HDLSPEFNWN SVFSVTENIS HRFAQIRYRN KEGDVFYVLD QKVTLNDDVD GGFLQAKLIA PARFVHAIET TRRTTVYAFL FSATIVMLIV LAFFNRSANK SKQLADARAE SAAIVSASKD AIISVDLTGR VKSWNNAAKG LLSLSAVDVI GKTLMELRVF DDIELSDIFE RLSNKHRQLN IETQIESQEN SPIFLALSFS PIANSEDRIE GIAIIARDVT QERIADEKIK QANAELEEKV ALRTVELQKA SGIKSAFISN ISHEMRTPLN GIIGTLNLVK REHLSENQQR YIEMTEVSVN TLSTLVNDVL DLSKIEAGKL DLDIKPFNPV NLIESLCGSM AVKAQEKGLE FIIDVSALNY QSMVSDPHRF SQILTNLVNN AIKFTETGYI KVSAHTELVK DKVHLHCAIA DSGEGIAKEN QDKLFSAFSQ ADSSVASKHG GTGLGLSICR QLVTLLKGEV NFTSQKNQGS VFYFSISADA NLCQLSPPST CLANISTAVF IEHKALYQST CQMIEALGGT ITPAESFDKM FAAEMPSTWS EPRVDYIVID QQHPDLMALD DKWLECIAID DGSAKVVLLK RDGEPTAWLK NIKPTVLTKP ILRTEFLQKV TRLNTNSSSI EAASVNRPPE INGQIENPPG DFEKIKGARV LVVDDNEINV EVAKGVLSRL PVTLLQATNG KEALQQLILA ERRNEVIHCV LMDCQMPIMN GYEASQRIRK GEVGELYKNI PIIAMTANAM LGERNKCLSA GMDDYLTKPV NEDIMQEKVT KWTLSVYQAP QR
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