Gene Patl_2104 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_2104 
Symbol 
ID4173783 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp2548103 
End bp2551231 
Gene Length3129 bp 
Protein Length1042 aa 
Translation table11 
GC content44% 
IMG OID638055112 
Productmulti-sensor hybrid histidine kinase 
Protein accessionYP_661676 
Protein GI109898421 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGCAGG CGATTCCTCC TCTTCGTAGT CAATTTAAAT TTCATAAGCA TGTACTACCC 
ATAACGTTAG TGGCTATTTT GCTCCTATTG GCCAGCGCAG TGGCGGTTTT CGAATTTCAA
CTAAGCCAGT CTGTTACAGA TGAGTTAAAG AGCACTCTGT CTGCAGCGGG CGATCAAATC
AATGCACAGG CTCAAGAGGA CATCGAAAAT TATCGACAAG ATTTACGCTT TCTGCACGCG
ACTCCACCAG TCAGTGGGTT ACCCAGAGCA TTGGAACACA ACGGTGTTGA TCCGCTCGAC
AACACTACAT CTGCCCAATG GCGTCAACGC TTGGAAATGA TCTTTTCTGC TTTTTTAACC
AGTAACCCTG AGTACGATCA AATAAGGGTG ATAAGCGCTG ATAAGTCCGC CATGGAGTTA
GTGAGGGTTG ATAGAGTGGC CGGTAATATT GAAGTAGTGT CACCAGAGCA ATTGCAAAGT
AAACGGGCCA GTGAGTACGC CCAAAAGAGC GCAGCTTTGT CAGAAGGTGA AATTTACATG
TCGCGCATTT CGCTTAACAA AGAGTATGGC AAACTGGATT ATCCATATCG ACCTATGTTG
CGATTATCGC TGCCGATATT CGACGATAGT GGTAAACGCT TTGGTTTCCT TATTGTTAAC
ATTAATACCT TGCCGCTGTT TAGCTCGTTG AGCAATACGT TGGACTCGCC AAACTTTCTA
ACGTTAACTG ACAGTGATGG ATTTTTTCTT ATCACTCCCG ATGAACAATA TCAGTACAGT
CACGACCTCT CGCCGGAATT TAACTGGAAC TCAGTATTTA GTGTTACAGA AAACATCTCA
CATCGATTTG CACAAATCCG CTATCGCAAT AAAGAAGGTG ATGTTTTTTA CGTATTAGAT
CAGAAAGTGA CGCTCAATGA CGATGTGGAT GGTGGCTTTC TTCAAGCTAA GTTGATTGCA
CCAGCGCGTT TCGTTCACGC CATAGAAACA ACCAGAAGAA CCACGGTTTA TGCTTTTTTA
TTCAGCGCGA CAATTGTCAT GTTGATTGTG CTCGCCTTTT TTAATCGCAG TGCAAACAAA
AGCAAACAGC TAGCAGATGC TCGCGCCGAG TCAGCTGCGA TCGTCAGCGC CTCTAAAGAT
GCGATTATCA GTGTTGATCT GACGGGTAGG GTAAAGAGCT GGAACAATGC GGCCAAGGGG
TTACTTAGCT TAAGTGCTGT AGATGTGATT GGCAAAACCT TGATGGAACT TCGGGTATTT
GATGACATTG AATTGAGCGA TATATTTGAG CGGCTGTCGA ATAAACACCG CCAATTGAAT
ATTGAAACGC AAATTGAATC ACAAGAAAAT TCACCAATAT TTTTAGCGCT TTCATTTTCT
CCTATTGCGA ATAGCGAAGA CCGGATCGAA GGCATCGCTA TTATTGCCCG GGATGTGACT
CAAGAGCGCA TTGCAGATGA AAAAATAAAA CAGGCTAACG CTGAACTTGA GGAAAAAGTC
GCCCTTCGCA CAGTAGAATT GCAAAAAGCC AGCGGCATCA AAAGTGCGTT TATTTCCAAC
ATTAGCCATG AAATGCGAAC GCCCCTCAAT GGGATCATAG GCACATTAAA CTTGGTTAAA
CGTGAGCACT TATCTGAAAA CCAGCAGCGA TATATTGAGA TGACGGAAGT CAGTGTCAAT
ACGTTATCGA CGCTGGTAAA TGACGTTCTA GATCTGTCAA AAATTGAAGC GGGCAAGTTA
GATTTAGATA TTAAGCCTTT CAATCCAGTA AATTTAATTG AGAGTCTGTG CGGCAGTATG
GCGGTCAAGG CTCAAGAAAA AGGCCTAGAA TTTATCATTG ATGTGTCAGC CCTAAATTAC
CAGTCAATGG TTAGCGATCC TCATCGTTTT TCACAGATTC TGACTAATTT AGTCAACAAC
GCGATTAAAT TTACTGAAAC GGGATACATA AAAGTATCCG CTCATACTGA ACTTGTGAAG
GACAAGGTAC ATTTACATTG CGCTATCGCG GATTCAGGAG AAGGAATCGC TAAAGAAAAC
CAGGACAAAC TTTTCAGCGC TTTTTCGCAA GCAGACAGTA GCGTTGCCTC GAAGCATGGG
GGTACGGGGT TAGGATTATC TATTTGCCGG CAATTAGTCA CTTTATTAAA AGGTGAGGTG
AATTTTACGT CACAGAAAAA CCAAGGAAGC GTATTTTATT TTTCTATCAG CGCAGATGCC
AATTTGTGTC AATTATCACC ACCTTCCACT TGCTTAGCAA ATATCAGCAC GGCGGTGTTT
ATTGAGCATA AAGCGCTATA TCAAAGCACT TGCCAGATGA TCGAGGCCTT GGGTGGAACG
ATAACCCCTG CTGAGAGTTT CGATAAAATG TTTGCTGCTG AGATGCCTAG CACTTGGTCA
GAGCCGCGAG TAGATTATAT TGTGATTGAC CAGCAACATC CTGACTTAAT GGCGCTGGAT
GATAAGTGGC TAGAATGTAT CGCCATAGAT GATGGAAGCG CTAAAGTGGT TTTACTTAAA
CGTGACGGTG AGCCCACCGC GTGGTTGAAA AATATCAAGC CAACCGTGCT GACTAAACCA
ATTTTGCGTA CTGAATTTCT GCAAAAAGTG ACACGGTTAA ATACCAATTC TTCGAGTATT
GAGGCTGCAA GTGTAAACCG CCCCCCAGAG ATTAACGGCC AGATTGAAAA CCCTCCTGGT
GATTTTGAGA AAATAAAAGG GGCTCGGGTA CTGGTGGTGG ATGACAACGA AATAAATGTT
GAAGTGGCCA AAGGCGTGCT GTCGAGATTG CCTGTGACCT TACTTCAAGC GACAAATGGC
AAAGAAGCCT TACAACAACT GATATTGGCC GAGCGCAGGA ATGAAGTCAT TCACTGCGTA
CTAATGGATT GCCAAATGCC CATCATGAAT GGATATGAGG CCAGTCAGCG TATTCGGAAA
GGCGAAGTAG GGGAGCTGTA TAAAAATATT CCTATTATTG CCATGACAGC TAACGCAATG
TTAGGCGAGC GAAATAAGTG CTTAAGTGCA GGCATGGATG ACTACTTAAC AAAACCCGTC
AACGAAGACA TTATGCAAGA AAAAGTCACT AAGTGGACAT TGTCGGTTTA TCAGGCACCT
CAACGTTAA
 
Protein sequence
MAQAIPPLRS QFKFHKHVLP ITLVAILLLL ASAVAVFEFQ LSQSVTDELK STLSAAGDQI 
NAQAQEDIEN YRQDLRFLHA TPPVSGLPRA LEHNGVDPLD NTTSAQWRQR LEMIFSAFLT
SNPEYDQIRV ISADKSAMEL VRVDRVAGNI EVVSPEQLQS KRASEYAQKS AALSEGEIYM
SRISLNKEYG KLDYPYRPML RLSLPIFDDS GKRFGFLIVN INTLPLFSSL SNTLDSPNFL
TLTDSDGFFL ITPDEQYQYS HDLSPEFNWN SVFSVTENIS HRFAQIRYRN KEGDVFYVLD
QKVTLNDDVD GGFLQAKLIA PARFVHAIET TRRTTVYAFL FSATIVMLIV LAFFNRSANK
SKQLADARAE SAAIVSASKD AIISVDLTGR VKSWNNAAKG LLSLSAVDVI GKTLMELRVF
DDIELSDIFE RLSNKHRQLN IETQIESQEN SPIFLALSFS PIANSEDRIE GIAIIARDVT
QERIADEKIK QANAELEEKV ALRTVELQKA SGIKSAFISN ISHEMRTPLN GIIGTLNLVK
REHLSENQQR YIEMTEVSVN TLSTLVNDVL DLSKIEAGKL DLDIKPFNPV NLIESLCGSM
AVKAQEKGLE FIIDVSALNY QSMVSDPHRF SQILTNLVNN AIKFTETGYI KVSAHTELVK
DKVHLHCAIA DSGEGIAKEN QDKLFSAFSQ ADSSVASKHG GTGLGLSICR QLVTLLKGEV
NFTSQKNQGS VFYFSISADA NLCQLSPPST CLANISTAVF IEHKALYQST CQMIEALGGT
ITPAESFDKM FAAEMPSTWS EPRVDYIVID QQHPDLMALD DKWLECIAID DGSAKVVLLK
RDGEPTAWLK NIKPTVLTKP ILRTEFLQKV TRLNTNSSSI EAASVNRPPE INGQIENPPG
DFEKIKGARV LVVDDNEINV EVAKGVLSRL PVTLLQATNG KEALQQLILA ERRNEVIHCV
LMDCQMPIMN GYEASQRIRK GEVGELYKNI PIIAMTANAM LGERNKCLSA GMDDYLTKPV
NEDIMQEKVT KWTLSVYQAP QR