Gene Patl_2059 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_2059 
Symbol 
ID4173738 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand+ 
Start bp2505657 
End bp2506292 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content47% 
IMG OID638055067 
Productlysine exporter protein LysE/YggA 
Protein accessionYP_661631 
Protein GI109898376 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1280] Putative threonine efflux protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAGCTGA GTCTTTATTG GGGCGAGTTC TTAACAATCG CCGGGGTACA CTTGTTGGCA 
GTGGCAAGTC CAGGTCCAGA CTTCGCAATT GTGCTAAAGC ACAGCATCAA TTATGGTCGG 
CGCATCTCGA TGATCACCAG TGTGGGCGTC GGCACTGCGA TACTCTTGCA TGTGACTTAC 
TCTTTGCTGG GTATTGGTCT GCTGCTTAAA ACGAACCCTT TGGTTTACAC CATATTTAGT 
TATTTAGCAG CGGCTTATCT AGTCTATATC GCGATAGGCG CACTTAAAAG TAAGGCGCCA 
GATAACACTG CACCGGTGTC GGCCAACGTG ACACAAAGCA CCATCAGTGA CAAAAAAGCA 
TTTGCTGTGG GATTTTTAAC GAACGGATTG AACCCCAAGG CAACGTTGTT CTTTTTATCG 
GTATTTGCTG TGGCTGTATC AGCCGAAACG CCAAGCAGTA TCAAATTGGT CTATGGATTG 
TATCTCGCAG TAGCTACAGG CGTATGGTTT TGCTTCTTGT CATATTTACT TGGCACGCGA 
AAAGTCCGTG CCTTTATTCG CCAATATAGC CATTGGTTTG ACCGCATCAT GGGGGGAGTT 
CTTTTGCTGC TGGCAGCAAA ATTAGTCATG ACGTAA
 
Protein sequence
MELSLYWGEF LTIAGVHLLA VASPGPDFAI VLKHSINYGR RISMITSVGV GTAILLHVTY 
SLLGIGLLLK TNPLVYTIFS YLAAAYLVYI AIGALKSKAP DNTAPVSANV TQSTISDKKA 
FAVGFLTNGL NPKATLFFLS VFAVAVSAET PSSIKLVYGL YLAVATGVWF CFLSYLLGTR 
KVRAFIRQYS HWFDRIMGGV LLLLAAKLVM T