| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2058 |
|---|
| Symbol | |
|---|
| ID | 4173737 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 2504938 |
|---|
| End bp | 2505666 |
|---|
| Gene Length | 729 bp |
|---|
| Protein Length | 242 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638055066 |
|---|
| Product | NAD-dependent deacetylase |
|---|
| Protein accession | YP_661630 |
|---|
| Protein GI | 109898375 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0846] NAD-dependent protein deacetylases, SIR2 family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGCTG AGGGTTGGCC AAAAATCGTT ATTTTAACAG GGGCAGGCAT TTCAGCGGAA
TCAGGTTTGA AGACGTTCCG CGATAATAAC GGATTATGGG AAGAGCATTC AGTACATGAT
GTTGCAACGC CAGAAGCCTT TGTTCGAAAC CCTGAATTAG TCTATCGATT TTACAACCAG
CGCAGAGCGC AATTGCAAAG TGACAATGTA AAGCCGAATG CAGCACATAT TGCACTTGCT
CAATTAGAAT CTGTATTACC TGGTCAAGTA TTGGTGATTA CCCAAAACGT TGATGACTTG
CATGAGCGGG CAGGAAGTAA ACATGTATTG CACATGCACG GTGAGTTATT ATCTGCTCGC
TGCTGCCATA GTCAACGCCG CTTTTCGATG AAAAACCAGT TTGATGGCAA CAGCCGATGT
AAATGTTGTA CACCAAGCCA AAATATTAGA CCGGATATTG TCTGGTTTGG TGAAATGCCC
TTTTATATGC AGGAGATAGA GCGTTCAGTG CAAGAGGCCG ACGTGTTTAT ATCCATCGGT
ACGTCAGGCA ACGTTTATCC TGCAGCGAGT TTAGTGCAAA TAGCGAATGA ATATGGAGCA
CATACTGTTG AGTTGAACTT AGCGCCAAGT GAGGGGAACG ATAATTTTTT AGAGGCGTAC
TACGGTTTAG CCAGTGATGT CGTACCTAAC TACATAAAAA ATATATTAAG GGTAATTAAA
TGGAGCTGA
|
|---|
| Protein sequence | MAAEGWPKIV ILTGAGISAE SGLKTFRDNN GLWEEHSVHD VATPEAFVRN PELVYRFYNQ
RRAQLQSDNV KPNAAHIALA QLESVLPGQV LVITQNVDDL HERAGSKHVL HMHGELLSAR
CCHSQRRFSM KNQFDGNSRC KCCTPSQNIR PDIVWFGEMP FYMQEIERSV QEADVFISIG
TSGNVYPAAS LVQIANEYGA HTVELNLAPS EGNDNFLEAY YGLASDVVPN YIKNILRVIK
WS
|
|---|
| |