| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2052 |
|---|
| Symbol | |
|---|
| ID | 4173926 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 2496922 |
|---|
| End bp | 2498142 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638055060 |
|---|
| Product | aminotransferase, class V |
|---|
| Protein accession | YP_661624 |
|---|
| Protein GI | 109898369 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0075] Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAACACC TTACTCCCCC TCCTCGCCTG CTAATGGGCC CAGGACCAAT AAACTGTTAT
CCCCGGGTGT TGAGTGCCAT GTCTACGCAA CTGATCGGTC AGTACGACCC AGTTATGACC
GGTTATATGA ACGAAGTCAT GAGTTTATAT CGTGATGTGT TTATGACCAA AAATAAGGCA
ACACTATTGA TTGACGGTAC CTCAAGAGCT GGAATTGAAG CTGTTTTGGT GTCATGCATC
GAACCAGGAG ATAAAGTTCT GGTACCCATT TTTGGTCGTT TCGGGCATTT ACTTAAAGAA
ATTGCCGAAC GAGCAGGCGC AGATGTGCAC TGCATTGAAG CCACATGGGG CGAAATATTC
GAGCCTGAGC AAATTGAAGA GGCGATTAAG CGCGTTCAGC CTAAAGTCCT CGCTTTAGTG
CAAGGTGACA CCTCTACTAC CATGTTGCAG CCGCTTGAGC ACATAGGTGA AATTTGCCGT
CGCCATGATG TCATTTTTTA CTCAGACGCC ACAGCCTCCA TAGGCGGCAA CCCCTTTGAA
ACCGATAAGT GGCAATTAGA TGCAGTGTCC GTTGGTTTAC AAAAATGTTT AGGCGGCCCT
AGTGGAAGTG CGCCTATTAC ACTAAGCGAA CGTTACGTCG AATTAGTCCG CGGGCGACAA
CATGTTGAGG CCGGCATAAA AGCCGATCAT CATAATGCCG GCAATGGCAG CCGCATTCGT
TCGAACTACT TTGATATTCC CATGATCCTT GATTACTGGG GAGAAGAGCG CTTAAACCAT
CACACCGAAG CAACGTCCAT GCTTTATTGT GCCCGCGAAT GCGCGATAAA TTTGTTAGAA
GAAGGCGTTG AAGCGTCCAT CGCCCGTCAT GAATTACACG GAAATGCCAT GCTGGCTGGT
ATTCAAGGGA TGAACCTAAA ACCTTTTGGG GACTTACGTC ACAAGATGAA CAACGTGGTC
GGGGTCTATA TTCCACAGGG TGTCGATGGT GAACAAATTC GTCATCAATT ACTGCACGAT
TTTAATATAG AGATCGGCAC GAGCTTTGGG CCGCTACACG GTAAGATTTG GCGTATCGGC
ACCATGGGTT ATAACGCTCG TCAGGACACG GTATTGCATA CGTTGCAATC CCTTGAAACC
TTACTGCGCA GAGCCGGCCA CACATTACAG GCTGGCCAAG CCATTGATAG CGCGTTCTCT
GTGTACAGCG GGAAAGGTTA A
|
|---|
| Protein sequence | MKHLTPPPRL LMGPGPINCY PRVLSAMSTQ LIGQYDPVMT GYMNEVMSLY RDVFMTKNKA
TLLIDGTSRA GIEAVLVSCI EPGDKVLVPI FGRFGHLLKE IAERAGADVH CIEATWGEIF
EPEQIEEAIK RVQPKVLALV QGDTSTTMLQ PLEHIGEICR RHDVIFYSDA TASIGGNPFE
TDKWQLDAVS VGLQKCLGGP SGSAPITLSE RYVELVRGRQ HVEAGIKADH HNAGNGSRIR
SNYFDIPMIL DYWGEERLNH HTEATSMLYC ARECAINLLE EGVEASIARH ELHGNAMLAG
IQGMNLKPFG DLRHKMNNVV GVYIPQGVDG EQIRHQLLHD FNIEIGTSFG PLHGKIWRIG
TMGYNARQDT VLHTLQSLET LLRRAGHTLQ AGQAIDSAFS VYSGKG
|
|---|
| |