| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2031 |
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| Symbol | |
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| ID | 4173905 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2472405 |
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| End bp | 2475518 |
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| Gene Length | 3114 bp |
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| Protein Length | 1037 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638055039 |
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| Product | CzcA family heavy metal efflux protein |
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| Protein accession | YP_661603 |
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| Protein GI | 109898348 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3696] Putative silver efflux pump |
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| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTGAGT CAATACTGCG TTTGTCTATT GAGCGTCGAG GTTTAATGTT GATGCTGATT
TTTCTTGTGC TGGGAATGGG GCTATTCAGT TACCAAAAAT TACCTATTGA TGCGGTACCT
GATATCACCA ACGTGCAAGT GCAAATCAAT ACACAAGCAC CGGGTTATTC GCCCTTGGAA
ACCGAGCAAC GGATCACGTT TGTAGTAGAA ACAGCATTGG CGGGATTGCC TGAACTATCC
TACACCCGCT CTTTATCCCG CTACGGGCTA TCTCAGGTAA CAGCGGTATT TGATGAAGGC
ACTGATCTAT ATTTTGCGCG CAATCTCATC AATACGCGAC TGGGAGCAAT CAAAAGTCAG
CTACCTGAAG GTTTAGAGCC AGAAATGGGT CCTATCGCTA CGGGATTGGG AGAAATCTAT
ATGTATACCT TGCGAGCTGA TCAAAGTGCC GTGCAAAAAA ATGGTGAGCC ATATGACGCA
ATGGCTCTTA GGGAAATTCA TGACTGGATA GTAAAACCTC AGCTTGCACT CGTTAAAGGG
ATCACAGAAG TCAACGCCAT TGGTGGTTAT GTGAAGCAAT ACCACGTCAA TCCTGATCCA
CAAAAAATGC TTAATTTCGA TGTCAGTTTG AGTGACGTCC ATAGCGCACT GACACGCAAT
AACGCGAATC AGGGAGCGGG GTTTGTTGAG CGAAATGGGC AACAAATTCT AGTGCGCTCA
CAAGGTCAAC TCCAGACACT TAACGATATA GAAAGTGTGG TGATTAAACG CATTAATACT
GTCCCCGTTG CGGTGAAAGA CATTGGCAGT GTAGCTATTG GTAAGGAGCT GAGAACGGGT
GCGGCAACGC AGGAGGGTGT AGAGACCGTT TTAGGTACAG CAATGATGCT AGTCGGCGAA
AACTCACGAG CCGTTGCCCA ATCCGTTGCC AAAAAGGTGA AGGGCATTCA ATCCAGCTTA
CCTGATGGTA TTGTCATTGA GCCAGTCTAC GACCGCACCC TACTAGTCGA TAAAGCTATC
GACACGGTTC AGAAGAATTT AGTAGAAGGG GCGTTATTAG TCATAGTGAT ATTGTTCATA
TTGCTTGGCA ATATTCGCGC CGCGCTCATC ACTGCGGCAG TTATTCCGCT AGCGATGTTG
GCGACCATCA CAGGGATGGT TAATACCGGT GTGTCTGCCA ATCTGATGAG CCTTGGGGCT
TTGGACTTTG GATTAATTGT CGATGGTGCG GTGATCATCG TAGAGAACTG TATCAGGCGG
TTATCCGAGT CTCAGAAGCG CACAGGTGGA GTCTTGCCAC TAAAAGAGCG GCTAGAACTG
GTTTTTCAAG CGACCAACGA AGTCATTCGT CCTAGCTTGT TCGGTGTATT GATTATTACT
GTGGTGTATA TCCCGCTGTT CTCATTGACA GGCGTTGAGG GCAAGATGTT TCAGCCAATG
GCGGCAACTG TCATCATGGC GCTGATAGCA GCGATGCTGT TCTCCATTAC CATTGTACCA
GCGGCAGTTG CGATGTTTAT GGGCGGAAAA GTCAGTGAAA AAGAAAGCTT CATTATTGTT
GCAGCCAAAT TCGCCTATCG CCCCATCATT CACCTTGCAC TGAAATTACG CTGGATAGTG
CTTGTCGGCT CAGTAGTGCT AGTAGTAGGC AGCTTATGGT TGGCAACGCG ATTAGGCTCT
GAGTTTGTTC CCCAACTTGA CGAAGGAGAC ATCGCACTGC ACGCCATGCG AATACCGGGC
ACAGGTATTG AACAAGCCGT CGCCCTGCAA AAGACGCTTG AATCTACCTT GATGGAATAT
GAACAAGTGT TGACCGTATT TGCTAAAACC GGCACCGCGG AAGTTGCTAC TGATGCAATG
CCTCCCAATG TGACCGATAC TTTTGTGATG CTTAAGCCAC GTGCGCAGTG GCCAGATCAA
ACATTGTCAA AAGCGGATTT TGTTGAAACC CTTGAGCAGG ATCTGCAAGC GGTAACTGGC
AACAACTATG AGTTCACTCA ACCGATCCAA ATGCGTTTTA ACGAATTGAT CAGTGGGGTG
AGAGCTGATC TTGGCATTAA AGTCTTTGGA GATGATTTAA CCACGCTTGT TGCCTCTGCA
AACGACATCT TAACGGTTTT GCAATCAATA GACGGCGTGG CGGATGCACG ACTTGAGCAG
GTCGATGATA TCCCTATCTT CACTATCAAT CCTAAGCCAG TCGATTTGGC ACGTTATGGG
TTGGACGTCG CCGACTTGCA GGAGTGGTTG GCGTCGGCCA TCGGGGGTAA TACCGCTGGC
TTAATTTTTG AAGGAGATAG ACGATTCGAG TTGCTTGTGC GATTTGATGA AGGTATTCGC
ACCGATTTAG ATGCCATTGG CAGCACTCCT ATTATTACAT CCGATGGGGA ATTTGTACCG
TTATCAGAAG TCGCTACACT GAGTTACTCG TCTGTTCCCA ATCAAATCAG TCGAGAAAAC
GGTAAGCGCA GAGTCGTGGT TACCGCCAAT GTCAGAGAAC GCGACTTAGG GAGTTTTGTT
GACGAAGCAA AAATCAAAAT AACCGAACAG GTTGCACTGC CCGCAGGCTA CTGGCTGGAT
TATGGCGGCA CGTTTGAGCA GCTTGAAAGC GCTAGTCAGC GGCTGTCTAT TGTAGTGCCT
GCCACGCTTA TTCTGATACT GGTGTTACTG GTAGTCGTGT TTGGCTCATT TCGTGATGCT
TTGATAATAT TCACTGGCGT GCCTTTAGCC TTAACGGGAG GTGTTTTCGC GCTCTGGATG
CGTGACATGC CACTGTCTAT ATCTGCCGGA GTCGGGTTTA TTGCGCTTTC TGGTATTGCG
GTACTAAACG GCTTAGTGAT GTTGTCATTT ATTAAGCAGC GAGTACTAGA AACAGGTGAC
TTAATTAACT CAATCGTTGA CGGTGCTACC ACAAGATTGC GTCCGGTTTT GATGACGGCA
CTGGTAGCAA GTTTAGGCTT TATTCCCATG GCACTTAATG TCGGAACGGG AGCTGAAGTG
CAAAGACCGT TGGCAACGGT AGTGATTGGC GGGATCATCT CATCGACCAT TCTAACATTG
GTCGTTTTGC CTATTTTGTA TCGGGTAATG CATTCGAAAT CACACAAAGT GTGA
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| Protein sequence | MIESILRLSI ERRGLMLMLI FLVLGMGLFS YQKLPIDAVP DITNVQVQIN TQAPGYSPLE
TEQRITFVVE TALAGLPELS YTRSLSRYGL SQVTAVFDEG TDLYFARNLI NTRLGAIKSQ
LPEGLEPEMG PIATGLGEIY MYTLRADQSA VQKNGEPYDA MALREIHDWI VKPQLALVKG
ITEVNAIGGY VKQYHVNPDP QKMLNFDVSL SDVHSALTRN NANQGAGFVE RNGQQILVRS
QGQLQTLNDI ESVVIKRINT VPVAVKDIGS VAIGKELRTG AATQEGVETV LGTAMMLVGE
NSRAVAQSVA KKVKGIQSSL PDGIVIEPVY DRTLLVDKAI DTVQKNLVEG ALLVIVILFI
LLGNIRAALI TAAVIPLAML ATITGMVNTG VSANLMSLGA LDFGLIVDGA VIIVENCIRR
LSESQKRTGG VLPLKERLEL VFQATNEVIR PSLFGVLIIT VVYIPLFSLT GVEGKMFQPM
AATVIMALIA AMLFSITIVP AAVAMFMGGK VSEKESFIIV AAKFAYRPII HLALKLRWIV
LVGSVVLVVG SLWLATRLGS EFVPQLDEGD IALHAMRIPG TGIEQAVALQ KTLESTLMEY
EQVLTVFAKT GTAEVATDAM PPNVTDTFVM LKPRAQWPDQ TLSKADFVET LEQDLQAVTG
NNYEFTQPIQ MRFNELISGV RADLGIKVFG DDLTTLVASA NDILTVLQSI DGVADARLEQ
VDDIPIFTIN PKPVDLARYG LDVADLQEWL ASAIGGNTAG LIFEGDRRFE LLVRFDEGIR
TDLDAIGSTP IITSDGEFVP LSEVATLSYS SVPNQISREN GKRRVVVTAN VRERDLGSFV
DEAKIKITEQ VALPAGYWLD YGGTFEQLES ASQRLSIVVP ATLILILVLL VVVFGSFRDA
LIIFTGVPLA LTGGVFALWM RDMPLSISAG VGFIALSGIA VLNGLVMLSF IKQRVLETGD
LINSIVDGAT TRLRPVLMTA LVASLGFIPM ALNVGTGAEV QRPLATVVIG GIISSTILTL
VVLPILYRVM HSKSHKV
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