Gene Patl_2013 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_2013 
Symbol 
ID4173887 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand- 
Start bp2453056 
End bp2453703 
Gene Length648 bp 
Protein Length215 aa 
Translation table11 
GC content41% 
IMG OID638055021 
Productferric reductase-like transmembrane component-like 
Protein accessionYP_661585 
Protein GI109898330 
COG category[S] Function unknown 
COG ID[COG2717] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.289046 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGCAAC TACATTTTTT TAAACTTAAA CCTGCACACC TGCCCTGGTT AAAGTTGATT 
ATTCATTCGA GCGCGCTCGT TCCATTATTA TTAACCTTTT TTCATGCCTT TAATGATGAA 
TTAGGGGGGG ATCCTGTCAG CGCATTACTG CATTTTACTG GCTTAGGTGC ATTTAAATTA 
CTGCTGCTTT CATTGCTAGT GACCCCTTTA GCGCGTTTTT TAAAACAAGG TCCATTAATG 
CATGTTCGTA GACTTCTGGG GTTATACAGC TTCACTTATG CGCTAGCCCA TATCGCTAGT 
TACGTGTTGT TCGACTTACA ACTTGACTGG CCCCTACTGG TAAGTGAAAT AGTGAAGCGC 
CCATACATCA CCCTAGGCTT TGCTGGTTGG CTTATTCTGC TAGCGTTAGC GCTCACATCC 
ACTAAAAAAG CACAGCGAAG ATTAGGTAAA CACTGGCAAG GTCTGCATAA CTGGGTGTAT 
TTAGCAGCGA TTCTAGTATC GATACATTTT TTATGGTCCG TTAAGTCAGC CATATTAGAG 
CCTACAATTT ATATGGTATT GACCGCTTTT TTACTGGCCT ATAGACAAGA TAAGCTTAAG 
CGGTGGTTTA AAAAGCGAAT AAAAAGCAAC CAAATTAGAA AGAAATAA
 
Protein sequence
MAQLHFFKLK PAHLPWLKLI IHSSALVPLL LTFFHAFNDE LGGDPVSALL HFTGLGAFKL 
LLLSLLVTPL ARFLKQGPLM HVRRLLGLYS FTYALAHIAS YVLFDLQLDW PLLVSEIVKR 
PYITLGFAGW LILLALALTS TKKAQRRLGK HWQGLHNWVY LAAILVSIHF LWSVKSAILE 
PTIYMVLTAF LLAYRQDKLK RWFKKRIKSN QIRKK