| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2011 |
|---|
| Symbol | |
|---|
| ID | 4173885 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 2451920 |
|---|
| End bp | 2452396 |
|---|
| Gene Length | 477 bp |
|---|
| Protein Length | 158 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638055019 |
|---|
| Product | SecC motif-containing protein |
|---|
| Protein accession | YP_661583 |
|---|
| Protein GI | 109898328 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3012] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.340036 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTAC ATCTGTGTTT TTGTCATAGC GGTCTTCGCT ATGAGCAGTG CTGCAAACCT
TACCTACAAG GTTTGAGCTC TCCTGATACA CCTGAACAAC TCATGCGTTC GCGTTACAGT
GCATACGCAA CCAGCAACTA CCAATACGTA TTAGATACTT ACACTGTCAA TCAGCGTGAA
TCGTTGACAC TTGAAGACCT GCAGCGAGGC GGAAATGAAA CGCAGTGGTT ACGACTTGAT
GTGCTGAACA CGCAGACCCG TAAAGATGAT CTCAGCGGGC AAGTTGAATT TGTCGCCTAC
TATCAAGTAA ACGATACGAA ATATAAATTG CACGAACGCT CGACTTTCTA TCGGGAAAAC
AATCTGTGGC GCTACGACAA TGGTACCTTG TTCGAAGATG GTGGTTTATA TAAGCCACAA
CGCAACGATC TATGTTTGTG TGGCAGTGGT AAGAAATATA AAAAGTGTTG TCTTTAA
|
|---|
| Protein sequence | MNLHLCFCHS GLRYEQCCKP YLQGLSSPDT PEQLMRSRYS AYATSNYQYV LDTYTVNQRE
SLTLEDLQRG GNETQWLRLD VLNTQTRKDD LSGQVEFVAY YQVNDTKYKL HERSTFYREN
NLWRYDNGTL FEDGGLYKPQ RNDLCLCGSG KKYKKCCL
|
|---|
| |