| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1993 |
|---|
| Symbol | |
|---|
| ID | 4172128 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 2422147 |
|---|
| End bp | 2424186 |
|---|
| Gene Length | 2040 bp |
|---|
| Protein Length | 679 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638055001 |
|---|
| Product | carboxy-terminal protease |
|---|
| Protein accession | YP_661565 |
|---|
| Protein GI | 109898310 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0793] Periplasmic protease |
|---|
| TIGRFAM ID | [TIGR00225] C-terminal peptidase (prc) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00000930411 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCAATT CAATTCGCGT TACCGCTGTA TCAGCACTTT TTGCATTTAG CTCGGTGGCC
CTTGCGGTCA CGCACGCAGA AAGTGTCGAC GAAATTCCTG TTCTTAAGCA GGAATCGCAA
CATGCAGTGT CGGTTAAACG CATTTCATCT AATTTTTTGC GTTCGCACTA CAAGCCGATC
ACATTAGATG ATGCCCTGTC AGAGAAAGTA TTCGATCGCT ACATGCGTTC TCTTGATATC
AACCGTAACG TGTTTTTGAA TGCTGATGTT GAAAAATTCA AAGCAGAGCA AGATCATTTT
GATGAAGCCA TTGAGATGGG CGACTTAGAT ATCGCCTATC AGATTTATCA ACTGAATATG
CAGCGCCGTA TCGAACGATA TGAGTATGCA TTGACCTTAC TTGATAAAGA ATTCGATTTT
GAAAAGAAGG GTGACACCTT CACTTTCGAT AGAGAAGAAG CAGCTTGGCC AAAAAACACC
GCTGAATTAG ATGAGCTGTG GCGCGAGCGC GTGAAGTATG ACGCCTTGAA CTTAAAGTTA
GCCGATAAAG AATGGCCAAA GATCCAAGAG TTGTTAACTA AGCGTTATGA GCGGGCTATT
AAACGCTTAA AGCAAACGAC CAGTGAAGAT GTGTTTCAAA CCTTGATGAA TTCGTTTGCG
CGCAGCATCG AAGCGCATAC CAGTTATTTG TCACCACGTA ATGCAGAGCG TTTCCAAATG
GAAATGAATT TGTCATTTGA AGGCATTGGT GCCGTATTGC TAAGTGAGGA CGATTTCACC
GTTATCCGCA GTGTTGTGCC TGGTGGTCCA GCAGATCTAT CGAAAAAAAT TAAGCCAGAA
GATAAAATTG TCGGCGTCGC TCAAGATGAC GAAGACTTTG TTGATGTTAT CGGTTGGCGC
TTAGATGAAG TAGTTGAACT GATTAAAGGG CCAAAGGGGA GTGTGGTTCG TCTTCAAATA
GAGAAAGGCG ATTCAGAAAG CACGGTTCCT GAAGTGGTGA GTTTAACCAG AGATAAAATT
AAGCTAGAAG ACAGAGCCGC GAAGTCTGAA GTGTATGTGC CTGAAACAGG CCCGCATAAA
GGCGAAAAAC TCGGTGTTAT CACTATTCCC TCTTTCTACA ACAAACTGAG CGTTGATGTT
CGTAAAGAAC TTGAAAGCTT AAAAGAGCAG AACGTCGAAG GCGTGATTGT TGATTTGCGC
GGTAATGGCG GAGGCTCCTT AACTGAGGCT ACGTTGTTGA CCGGTTTGTT TATCGACAAA
GGACCTGTGG TACAAATTCG TGACGGTGCA GGGCGCATAC GTGTTGAACA AGATGTTGAT
GGTAAAACCT ATTATGATGG TCCGCTCACC GTATTGGTTG ATAGGTACAG TGCGTCTGCC
TCTGAAATTT TCGCAGCGGC GATGCAAGAC TACAGCCGCG CTTTGATTTT AGGTGAACAA
ACGTTCGGTA AAGGCACCGT GCAACAGCAT CGTGGCTTAG GGCGTATTTA TGATTTATAT
GAAAACCCCT TAGGCAGTGT GCAATTTACC ATTGCAAAGT TTTACCGCAT TGATGGCGGT
AGTACGCAGC ATCAAGGTGT GGTGCCTGAC GTATTATTTC CCTCGGCGAT TGATCCTAAA
GATTGGGGTG AAAGCCAAGA AGAAAACGCA TTACCATGGG ACAGCATTAA ACGCGCAACA
TACTCTACGT TTGGCGATAC ATCACAAGCG GCTAAACAAC TGAGTGAATT GCATGAAAAA
CGCGTGAAAG CAGATCCTGA GTTTGCTTAT ATTTTCGAAG ATATCGCTCA GTATAAAAGC
AAAGAAGATG ATAAAACCCT TTCTTTGGTA GAGTCAGAGC GTATCAAAGA GCGTGAAGAG
CGTGACGCAA AACGTCTAAA ACGCGCCAAT GAGCGTCTTG TTCGTCAAGG TTTAGAGCCG
GTAAAAAGTT TAGATGATTT ACCTGAGGAC CAACCTGAGA TTGACCCTTT CTTAGATGAA
GCGGCAAACA TTACTTATGA TTTGCTGGGC ACAGGCAAGT ACGCCATTCA CGCACAATAA
|
|---|
| Protein sequence | MINSIRVTAV SALFAFSSVA LAVTHAESVD EIPVLKQESQ HAVSVKRISS NFLRSHYKPI
TLDDALSEKV FDRYMRSLDI NRNVFLNADV EKFKAEQDHF DEAIEMGDLD IAYQIYQLNM
QRRIERYEYA LTLLDKEFDF EKKGDTFTFD REEAAWPKNT AELDELWRER VKYDALNLKL
ADKEWPKIQE LLTKRYERAI KRLKQTTSED VFQTLMNSFA RSIEAHTSYL SPRNAERFQM
EMNLSFEGIG AVLLSEDDFT VIRSVVPGGP ADLSKKIKPE DKIVGVAQDD EDFVDVIGWR
LDEVVELIKG PKGSVVRLQI EKGDSESTVP EVVSLTRDKI KLEDRAAKSE VYVPETGPHK
GEKLGVITIP SFYNKLSVDV RKELESLKEQ NVEGVIVDLR GNGGGSLTEA TLLTGLFIDK
GPVVQIRDGA GRIRVEQDVD GKTYYDGPLT VLVDRYSASA SEIFAAAMQD YSRALILGEQ
TFGKGTVQQH RGLGRIYDLY ENPLGSVQFT IAKFYRIDGG STQHQGVVPD VLFPSAIDPK
DWGESQEENA LPWDSIKRAT YSTFGDTSQA AKQLSELHEK RVKADPEFAY IFEDIAQYKS
KEDDKTLSLV ESERIKEREE RDAKRLKRAN ERLVRQGLEP VKSLDDLPED QPEIDPFLDE
AANITYDLLG TGKYAIHAQ
|
|---|
| |