| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1992 |
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| Symbol | |
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| ID | 4172127 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2421492 |
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| End bp | 2422142 |
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| Gene Length | 651 bp |
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| Protein Length | 216 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638055000 |
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| Product | putative solute/DNA competence effector |
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| Protein accession | YP_661564 |
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| Protein GI | 109898309 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3109] Activator of osmoprotectant transporter ProP |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00025199 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGATAATC CTCAAAAGTT TTCAAACAGT AAAGAAGTCA TCAATTTTTT AAGTGAGTCG
TTTCCTGCAT GCTTTAGTGT GACAGGGGAT GCGAAGCCGC TAAAAATTGG CATTTTCCAA
GATTTAGCTC AGCGCCTTGA AGAAGAAGAG CGTGTAAGTA AGACATTGCT TCGCTCCTCT
CTTAGACACT ATACAAATAG CTGGCGTTAT TTGCATAGTG TGAAAGAAGG TGCTTTTCGC
GTTGACCTTG ACGGTCAGCA GGCTGCTCCT ATTGAAAAAG AGCATGCAGA CCACGCCCAA
GCACAGCTTG AAGAAAGCAA AGCGAAAGTA GCAGAAAAGC GCAAAGCGCA GAATGCTGCC
AAGCCTGGTG CAAAGAAAAG TTACAAATCC AAGACAGTTC CTGCATTTAA ATCCTCGCCC
AAGGGAACTA ATCAGGATAA TGTGAAGCCA AAAGCTAAGT TACCACCCCC AGAGAAGCTA
TCAGCTGAGC AATTAGTCGC GGGAACTTCC GTTACCGTAA AAATAGGTAA ATCGCCTATG
CCTGCTACAA TTACTGATGT CAGTAAAGAT GGTGTTCAAG TACAGCTTGA TACAGGTATG
GTGGTAAAGG TTCAAGTAGA TAACTTGAGG TTGGCCCGTT CTAAGAGGTA G
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| Protein sequence | MDNPQKFSNS KEVINFLSES FPACFSVTGD AKPLKIGIFQ DLAQRLEEEE RVSKTLLRSS
LRHYTNSWRY LHSVKEGAFR VDLDGQQAAP IEKEHADHAQ AQLEESKAKV AEKRKAQNAA
KPGAKKSYKS KTVPAFKSSP KGTNQDNVKP KAKLPPPEKL SAEQLVAGTS VTVKIGKSPM
PATITDVSKD GVQVQLDTGM VVKVQVDNLR LARSKR
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