| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1988 |
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| Symbol | |
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| ID | 4172123 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2418479 |
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| End bp | 2419618 |
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| Gene Length | 1140 bp |
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| Protein Length | 379 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638054996 |
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| Product | chaperone protein DnaJ |
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| Protein accession | YP_661560 |
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| Protein GI | 109898305 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0484] DnaJ-class molecular chaperone with C-terminal Zn finger domain |
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| TIGRFAM ID | [TIGR02349] chaperone protein DnaJ |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.731806 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCGAAGC GAGATTATTA TGAAGTGCTG GGTGTCGAGA AGTCGGCTTC CGAGCGCGAT
ATAAAAAAGG CTTACAAGCG CCTTGCGATG AAATACCACC CGGATAGAAC TCAGGGTGAC
AAAGCCATGG AAGAGAAATT CAAAGAAGTG CAAGAGGCTT ATGAAATTCT CACCGACTCG
CAGAAACGTG CGGCGTACGA CCAATATGGT CATGCGGGCG TTGATCCGAA TCGTGGACAT
GGTGGCGGTC ATGGTGCAGG TGATTTTGGC GACATTTTCG GCGATGTATT TGGCGATATA
TTTGGTGGTG GTCGCGGTGG CGGTCGTCAG TCGCGCGCTG CTCGTGGTTC CGATTTACGA
TACAACCTTG AGCTGAGCCT AGAAGAAGCT GTTCGCGGGA AAAGTGTTGA AATTCGCGTA
CCTACTTTGG CTGAATGCGA TACTTGTGAT GGTTCTGGTG CCAAAAAAGG TTCAAGTGCG
AAGACGTGTA CCACGTGTCA TGGACAAGGC CAAGTGCAAA TGCGCCAAGG CTTTTTTGCT
GTACAGCAAG CGTGCCCAAC CTGTGGTGGT AAAGGTAAAA TCATCACTGA TCCGTGTGAT
GTATGTCACG GCCAAGGACG AGTTGAGAAA ACCAAAACCT TGTCTGTAAA AGTGCCAGCA
GGGGTAGATA CCGGCGACCG TATACGTCTT TCTAATGAAG GTGAAGCGGG TGAAAACGGT
GCTCCAGCAG GCGACTTATA CGTTCAAGTC CATGTTAAGC AGCATAAGAT CTTCGAACGT
GACGGTAACA ACCTGTACTG TGAAGTACCG CTTAGTTTCA CTCGCGCTGC TATCGGTGGG
GAAATTGAAG TCCCAACCCT TGAAGGCAAA GTTAAATTGA AGGTCACGCC AGAAACACAA
ACCGGTAAAA TGTTCCGTTT GCGTAACAAG GGTGTGAAAT CTGTACGCAG TGGCAGCGTC
GGTGATTTGA TCTGCAAAGT GGTTATCGAA ACCCCAGTAA ACTTAAATAG CCGTCAGAAA
GAATTGCTTC AAGAGCTCGA AGAATCTATG GGTAAAGGTA AAGAAACCGC TAAGAACCGC
CCGAAAGAGA GTGGCTTTTT TGACGGTGTT AAAAAATTCT TTGATGACTT AACTAACTAG
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| Protein sequence | MSKRDYYEVL GVEKSASERD IKKAYKRLAM KYHPDRTQGD KAMEEKFKEV QEAYEILTDS
QKRAAYDQYG HAGVDPNRGH GGGHGAGDFG DIFGDVFGDI FGGGRGGGRQ SRAARGSDLR
YNLELSLEEA VRGKSVEIRV PTLAECDTCD GSGAKKGSSA KTCTTCHGQG QVQMRQGFFA
VQQACPTCGG KGKIITDPCD VCHGQGRVEK TKTLSVKVPA GVDTGDRIRL SNEGEAGENG
APAGDLYVQV HVKQHKIFER DGNNLYCEVP LSFTRAAIGG EIEVPTLEGK VKLKVTPETQ
TGKMFRLRNK GVKSVRSGSV GDLICKVVIE TPVNLNSRQK ELLQELEESM GKGKETAKNR
PKESGFFDGV KKFFDDLTN
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