Gene Patl_1987 details

Gene Information

• Locus tag: Patl_1987
• Symbol: dnaK
• ID: 4172122
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: +
• Start bp: 2416360
• End bp: 2418279
• Gene Length: 1920 bp
• Protein Length: 639 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 638054995
• Product: molecular chaperone DnaK
• Protein accession: YP_661559
• Protein GI: 109898304
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0443] Molecular chaperone
• TIGRFAM ID: [TIGR02350] chaperone protein DnaK

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.636054
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGTAGAA TCATTGGAAT CGACTTAGGT ACAACTAACT CTTGTGTTGC TGTACTTGAT 
GGTGAAAAAG CAAAAGTAAT CGAAAACGCT GAAGGCGATC GCACAACTCC CTCAATCATC 
GCTTACAGCC AAGACGGTGA AACATTGGTG GGTCAACCTG CAAAACGTCA GGCTATCACC 
AACCCTAAAA ATACCTTATT CGCGATTAAG CGTCTTATCG GTCGCCGTTT TGAAGATAAA 
GAAGTACAGC GTGATATTGA CATCATGCCT TTCGATATCA TCAAAGCAGA TAATGGTGAT 
GCTTGGGTTC AAGCAAAAGA CGAGAAATTA GCACCACCGC AAATCTCTGC TGAAGTTTTG 
AAAAAAATGA AAAAGACAGC TGAAGATTAC CTTGGTGAAG AAGTAACAGC AGCGGTTATC 
ACCGTGCCTG CATACTTCAA CGATTCACAG CGCCAGGCAA CTAAAGATGC AGGCCGTATC 
GCTGGTCTTG AAGTAAAACG TATTATTAAC GAGCCAACAG CCGCTGCACT TGCATACGGC 
ATGGATAAGA AAAAAGGCGA CAGCGTTGTT GCAGTATACG ATTTAGGTGG TGGTACATTC 
GATATTTCTA TCATTGAAAT CGATGAAGCT GACGGCGAGC ATACTTTTGA AGTACTTGCT 
ACCAATGGTG ATACACACTT AGGTGGTGAA GATTTCGATA ACCAAGTTAT CAACTACTTG 
GTAGAAGAGT TCAAGAAAGA CTCAGGTATG GATTTACGTA AAGATCCATT AGCGATGCAA 
CGTCTTAAAG AAGCCGGCGA GAAAGCGAAG ATTGAATTGT CTTCTGCACA ACAAACTGAA 
GTGAACTTGC CGTACATTAC TGCTGATGCG TCTGGTCCTA AGCACTTAAC CATCAAGCTT 
ACTCGTGCAA AACTTGAGTC ACTTGTTGAA AAAATGGTTA AAGCAACCCT TGAGCCACTA 
AAACAAGCGC TTGCGGATGC TGACTTATCA GTAGGTGATA TCAACGATAT CATTTTGGTC 
GGTGGTCAAA CGCGTATGCC TTTAGTACAG AAATACGTAA CTGAATTCTT TGGTAAAGAA 
CCAAGAAAAG ACGTTAACCC TGACGAAGCA GTTGCGGTAG GTGCAGCCAT TCAAGGCGGC 
GTATTGTCTG GTGATGTTAA AGACGTATTG TTACTTGACG TAACACCTCT ATCACTAGGT 
ATTGAAACAA TGGGCGGTGT AATGACTGCC TTGATCGAGA AGAACACAAC TGTACCGACT 
AAGAAGTCTC AAACCTTCTC TACAGCTGAA GACAACCAGT CAGCGGTTAC AGTACATGTA 
CTTCAAGGTG AGCGTAAGCA AGCTGCTGGC AACAAATCTC TTGGTCAATT CAACCTTGAA 
GGCATTCGCC CAGCACAGCG CGGCGCGCCA CAAATTGAAG TCACCTTCGA CATCGATGCT 
GATGGTATCT TGCACGTATC TGCCAAAGAT AAAGACACCA ACAAAGAGCA GAAAATCACT 
ATCAAGGCTT CTTCTGGCTT GAGTGATGAC GAAGTCGAAA AAATGGTACA GGACGCGGAA 
GCGAACAAAG AAGCGGACAA GCAGTTCGAA GAAATGGTTC AAGCACGTAA CCAAGCTGAC 
GGCCTAATTC ACGGTACGCG TAAGCAAGTG GAAGAAGCTG GTGATGCTTT GTCTGATGAA 
GATAAAGCAG AAATCGAAGC TGCAGTTGTT GCTCTTGAAG AAGCAGTAAA AGCAGGTGAG 
AAAGAAGCTA TTGAGTCTAA AACTCAAGAG TTGATTCAAG CTTCTGCGAA GTTGATGGAA 
GTGGCGCAAG CACAGCAGGC AGCTGCCGGT GCTGAAGGCC AACCAGAAGA CGCTTCTGCT 
AAGCAAGACG ACGACGTTGT TGATGCCGAG TTCGAAGAAG TAAAAGACGA CAAAAAGTAA 

 

Protein sequence

MGRIIGIDLG TTNSCVAVLD GEKAKVIENA EGDRTTPSII AYSQDGETLV GQPAKRQAIT 
NPKNTLFAIK RLIGRRFEDK EVQRDIDIMP FDIIKADNGD AWVQAKDEKL APPQISAEVL 
KKMKKTAEDY LGEEVTAAVI TVPAYFNDSQ RQATKDAGRI AGLEVKRIIN EPTAAALAYG 
MDKKKGDSVV AVYDLGGGTF DISIIEIDEA DGEHTFEVLA TNGDTHLGGE DFDNQVINYL 
VEEFKKDSGM DLRKDPLAMQ RLKEAGEKAK IELSSAQQTE VNLPYITADA SGPKHLTIKL 
TRAKLESLVE KMVKATLEPL KQALADADLS VGDINDIILV GGQTRMPLVQ KYVTEFFGKE 
PRKDVNPDEA VAVGAAIQGG VLSGDVKDVL LLDVTPLSLG IETMGGVMTA LIEKNTTVPT 
KKSQTFSTAE DNQSAVTVHV LQGERKQAAG NKSLGQFNLE GIRPAQRGAP QIEVTFDIDA 
DGILHVSAKD KDTNKEQKIT IKASSGLSDD EVEKMVQDAE ANKEADKQFE EMVQARNQAD 
GLIHGTRKQV EEAGDALSDE DKAEIEAAVV ALEEAVKAGE KEAIESKTQE LIQASAKLME 
VAQAQQAAAG AEGQPEDASA KQDDDVVDAE FEEVKDDKK