Gene Patl_1985 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1985 
Symbol 
ID4172120 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp2412004 
End bp2415420 
Gene Length3417 bp 
Protein Length1138 aa 
Translation table11 
GC content46% 
IMG OID638054993 
Productmulti-sensor hybrid histidine kinase 
Protein accessionYP_661557 
Protein GI109898302 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms 
COG ID[COG0591] Na+/proline symporter
[COG0784] FOG: CheY-like receiver
[COG2205] Osmosensitive K+ channel histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGAATCC CTATGTTTAG TGTCTTGTCC TTGATGGCCA TCGTGGTTGG CTACTTACTG 
ATATTGTTTC TATTGGCCTT CTGGGGCGAT AAACGTGCAA AAGCCCATCA GCAACATCCG
TATATCTATA GCCTGGCGCT TGGGGTTCAT TGTACGTCTT GGGCATTTTT CGGTACCACC
ACTCAAGCCG CGCATTATGG GTGGGCTTTT ATTCCTACTT ATATGGGGGT GATTTGTGTT
TTCCTATTTG CTCACCCTAT CCTTCGACGC GTGGCCAATG TATGTCACCA GCATAATATA
AGCTCCCTCG CTGATTTTCT TAGTTTGCGT TACGACAAGT CTCACTTCTT GGCGGCTCTT
GTCACGCTTC TGTGTTTTAT TGGGGTTGTA CCTTATATCG CGTTGCAATT AGACGCCGTA
ACCGGTGGTA TTCGCGTGGT AACAGGAGCG GATAATCTCT GGCCTGACGG CGTAGGTTTC
TATGTAGCAG TATTAATGGC GATTTTCGCA GTATTGTTCG GAACACGCTC CCTCAATCTC
ACCGATAAAC ATCCAGGTTT GATGTTCACG GTGGCGTTCG AATCTGTTGT GAAACTGGCA
GGTTTAGTGA TTGTAGGTCT GTTCGTTTGT TACAGTTTAT ATGACGGTGT ATTTGACTTG
TTAGGAAAAG CACAGTTACA CCAACGCGCG AGCGAAACCA TCAACGCAGA TTCAGGAGTG
TGGGTCTACG CCAGTCAAAT GCTGCTTGGG GTTTGTTCGA TGTTCTGCTT GCCCCGGCAA
TTTCATATCA ATTTTATCGA AAACAATGGT GACAAAGAAA TCACCACCGC CCGTTGGCTG
TTCCCTTTGT ATTTATTAGG CATGACATTA TTCGTGCTAC CCATTGCCCT AGCTGGGCAC
ATGCTCTTTC CTGAAGGCAG TGTCAGCACA GACACTTACG CTCTTGCCTT ACCTGTGGCG
TCAGGAAATG CATGGGTCAC CATTATTGCC TTCATTGGTG GGCTCGCAGC GGCGACCAGC
ATGATCATAG TGGCCACCCT TGCTATGGGT GTCATGATAT CCAATAACAT CGCCACCCCA
TTGTGGTTAA CGTTGCAGTT ACGCACCCAA CAGCGACACC GCTTAAAACC CAGTAGTATC
TTACTCATTC GACGCGCCAC AGTGTTAGTC GTATTAGGAG TGGCTTATTT TTATCACGTT
AATATCAGTC AATCGGCATC GTTGGTGCAA AGTGGAGTTA TCGCGATAGC GCTGTTGTCG
CAAACATTTC CTATCCTATT ACTCGGTTTA TACTGGAAAC GGGGCACCAG ATTAGCCGCG
CAGTTGGCTC TGGCCAGTGG CTTCCTTTGC TGGGCGTATT GGTTATTGTG GCCCAGTATT
ACCGCAAGCT ATTATTTCAA CGATGCTCCC TCAGACATTC AACTTGCACA AGGATTTGTA
TTCAGTTTAG GGGTCAATAT TGTGTGTTTT TTCTTGGTGT CTTTTATCCA AGGTATGCGC
AGCCAGAACA TGGTACACGA TGCCATTACT CACAATACCC AACCTTTTGG TCACGCGGTA
AAAGTATCAA ACCTATTAAC CATTACAGAG AGAGTATGGG GGGCTGAGCG TCACCAAGCA
TTACTGGATA AACTGACTCC AGTACAACTT GCGGGCTACG CTAGCCCCAA GCTGTTATCT
ACCATTGAAA GCGAACTTGC GGGGCAAGTA GGCAGTGCCA GTGCGCGTAT TTTGCTTTCT
GCCATCGGTG AGAAGCGGGA TGTTGAGCTG TCAGAGCTCG TAGAGTTGGT TGAAGAAGCT
AGCCAAACCT TTCAGTTTAA CCATGAATTA CTCCAATCGT CAGTGGAGAA TATTCAACAA
GGCATAGTCG TGCTTGACCG GGAACTAAAT TTGCTCGCAT GGAATCAGCG CTATGTTGAG
CTGTTTAACT ACCCCAGAGG TTTTGTACAA GTGGGTATGT CCATTTATCA ATTGCTAGAA
TTTAATGCCA AAAGAGGACT ATTTGGTCAT AACGCCGACA CGGGGCAAAG CAATATAGAA
ATGGAGATTA AAAAGCGCGT TGCCTTTATG CAATTAGGCA GCGCCTATAA ATATGTTCGT
CATCAAGAGA ATGGTCAGGT CATTGAATTA AATGGTCGTC CATTACCCGG TGGCGGCTTT
GTTACCACCT ACAGTGACAT TACAGAATAC ATCAATATTC AGCAGCAACT TGAACAGGCT
AAAACGAGCT TAGAATCCAG GGTTCAAGAA CGCACCGAGC AGCTACAAAT TGCCAATATT
GATCTTGAGA AAGCACGCCG CGATGCGGAA AGTGCTAACG ACAGCAAAAC CAAGTTCTTA
GCCGCTGCGG GTCATGATCT CATGCAGCCC TTCAATGCGG CTTCCTTGTT TGCCGCCATG
CTCAAACAGA AATCGCCCCC AGGAGAAATG GCAGAGATGA GCTCCAATCT GGTCGATTCA
CTGAGTAATG CTGAGTCTTT ACTGTCAATG TTACTCGACA TGACGCGTTT AGAATCAGGG
GCGTTGACGC CACATGTACA AACCTTTCCG TTAGACAGTA TTTTACGCCC CATGCTCAAT
GAATTTTCAG TGCTTGCGGA ACAAAAAAAG TTACGCGTAA CTTATGTACG CGCTAATTTA
TGTGTAATCT CCGACCCTAA GTTGCTAAGA AGAATAATAC AAAACCTATT ATCAAATGCT
ATCCGATATA CCGATTCTGG GCGTATATTA CTGGGCGTAA AAAGGCAAAA TGGTCAGGCT
AGAATATGTG TTATGGATAC CGGTGCCGGG ATAGCCGAAG ACAAACAGCA AGAAATATTT
CTGGAGTTTC ATCAGTTAGA CAGCAACCCT AGTGCTCAAG GTTTGGGCTT AGGTTTAACC
ATAGTCGAGC GTATCAGTGC CCTACTTAAT CACCCTGTAA CGTTACACTC AACGCTGGGC
AAAGGTACGT CATTTGATAT CGCCGTACCA ATAGGGAATA AACAAAATAA CTCTCCAAAA
ACAGCAGCCC GTGGAAGCAA TGATGTTAAC CTGCCGCTAC ATAACAAACG TGTGCTGATT
GTTGATAACG AGCCTCAGAT CCTAGACGCG CTACAACGGT TATTAGTTGA TTGGGGCGCA
ACCGTGATTG CAGCCAAAGA TACTAAAACT GCGCTGCAAT TACTCAATCA GCCGATAGAC
TTAATGATAC TCGATTACCA ACTCGACCAT GGTGAAACCG GTATAGATGT GGCCCACGCT
ATCAGGCAAG TATTTATTGG CGAAGCTGGC TTACACATTC CCAGTATTCT TAACTCTGCG
CGCCAAGATG AGCAAATTAG ACAACAAGCG ATAGATGAGC AAATGCATTA TTTACCAAAA
CCGCTTAAAC CTCTCGCTTT GAAAAGACTG ATTAAACAAC TGCTGGCTAA AAAATAG
 
Protein sequence
MRIPMFSVLS LMAIVVGYLL ILFLLAFWGD KRAKAHQQHP YIYSLALGVH CTSWAFFGTT 
TQAAHYGWAF IPTYMGVICV FLFAHPILRR VANVCHQHNI SSLADFLSLR YDKSHFLAAL
VTLLCFIGVV PYIALQLDAV TGGIRVVTGA DNLWPDGVGF YVAVLMAIFA VLFGTRSLNL
TDKHPGLMFT VAFESVVKLA GLVIVGLFVC YSLYDGVFDL LGKAQLHQRA SETINADSGV
WVYASQMLLG VCSMFCLPRQ FHINFIENNG DKEITTARWL FPLYLLGMTL FVLPIALAGH
MLFPEGSVST DTYALALPVA SGNAWVTIIA FIGGLAAATS MIIVATLAMG VMISNNIATP
LWLTLQLRTQ QRHRLKPSSI LLIRRATVLV VLGVAYFYHV NISQSASLVQ SGVIAIALLS
QTFPILLLGL YWKRGTRLAA QLALASGFLC WAYWLLWPSI TASYYFNDAP SDIQLAQGFV
FSLGVNIVCF FLVSFIQGMR SQNMVHDAIT HNTQPFGHAV KVSNLLTITE RVWGAERHQA
LLDKLTPVQL AGYASPKLLS TIESELAGQV GSASARILLS AIGEKRDVEL SELVELVEEA
SQTFQFNHEL LQSSVENIQQ GIVVLDRELN LLAWNQRYVE LFNYPRGFVQ VGMSIYQLLE
FNAKRGLFGH NADTGQSNIE MEIKKRVAFM QLGSAYKYVR HQENGQVIEL NGRPLPGGGF
VTTYSDITEY INIQQQLEQA KTSLESRVQE RTEQLQIANI DLEKARRDAE SANDSKTKFL
AAAGHDLMQP FNAASLFAAM LKQKSPPGEM AEMSSNLVDS LSNAESLLSM LLDMTRLESG
ALTPHVQTFP LDSILRPMLN EFSVLAEQKK LRVTYVRANL CVISDPKLLR RIIQNLLSNA
IRYTDSGRIL LGVKRQNGQA RICVMDTGAG IAEDKQQEIF LEFHQLDSNP SAQGLGLGLT
IVERISALLN HPVTLHSTLG KGTSFDIAVP IGNKQNNSPK TAARGSNDVN LPLHNKRVLI
VDNEPQILDA LQRLLVDWGA TVIAAKDTKT ALQLLNQPID LMILDYQLDH GETGIDVAHA
IRQVFIGEAG LHIPSILNSA RQDEQIRQQA IDEQMHYLPK PLKPLALKRL IKQLLAKK