| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1985 |
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| Symbol | |
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| ID | 4172120 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2412004 |
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| End bp | 2415420 |
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| Gene Length | 3417 bp |
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| Protein Length | 1138 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638054993 |
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| Product | multi-sensor hybrid histidine kinase |
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| Protein accession | YP_661557 |
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| Protein GI | 109898302 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG0591] Na+/proline symporter
[COG0784] FOG: CheY-like receiver
[COG2205] Osmosensitive K+ channel histidine kinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGAATCC CTATGTTTAG TGTCTTGTCC TTGATGGCCA TCGTGGTTGG CTACTTACTG
ATATTGTTTC TATTGGCCTT CTGGGGCGAT AAACGTGCAA AAGCCCATCA GCAACATCCG
TATATCTATA GCCTGGCGCT TGGGGTTCAT TGTACGTCTT GGGCATTTTT CGGTACCACC
ACTCAAGCCG CGCATTATGG GTGGGCTTTT ATTCCTACTT ATATGGGGGT GATTTGTGTT
TTCCTATTTG CTCACCCTAT CCTTCGACGC GTGGCCAATG TATGTCACCA GCATAATATA
AGCTCCCTCG CTGATTTTCT TAGTTTGCGT TACGACAAGT CTCACTTCTT GGCGGCTCTT
GTCACGCTTC TGTGTTTTAT TGGGGTTGTA CCTTATATCG CGTTGCAATT AGACGCCGTA
ACCGGTGGTA TTCGCGTGGT AACAGGAGCG GATAATCTCT GGCCTGACGG CGTAGGTTTC
TATGTAGCAG TATTAATGGC GATTTTCGCA GTATTGTTCG GAACACGCTC CCTCAATCTC
ACCGATAAAC ATCCAGGTTT GATGTTCACG GTGGCGTTCG AATCTGTTGT GAAACTGGCA
GGTTTAGTGA TTGTAGGTCT GTTCGTTTGT TACAGTTTAT ATGACGGTGT ATTTGACTTG
TTAGGAAAAG CACAGTTACA CCAACGCGCG AGCGAAACCA TCAACGCAGA TTCAGGAGTG
TGGGTCTACG CCAGTCAAAT GCTGCTTGGG GTTTGTTCGA TGTTCTGCTT GCCCCGGCAA
TTTCATATCA ATTTTATCGA AAACAATGGT GACAAAGAAA TCACCACCGC CCGTTGGCTG
TTCCCTTTGT ATTTATTAGG CATGACATTA TTCGTGCTAC CCATTGCCCT AGCTGGGCAC
ATGCTCTTTC CTGAAGGCAG TGTCAGCACA GACACTTACG CTCTTGCCTT ACCTGTGGCG
TCAGGAAATG CATGGGTCAC CATTATTGCC TTCATTGGTG GGCTCGCAGC GGCGACCAGC
ATGATCATAG TGGCCACCCT TGCTATGGGT GTCATGATAT CCAATAACAT CGCCACCCCA
TTGTGGTTAA CGTTGCAGTT ACGCACCCAA CAGCGACACC GCTTAAAACC CAGTAGTATC
TTACTCATTC GACGCGCCAC AGTGTTAGTC GTATTAGGAG TGGCTTATTT TTATCACGTT
AATATCAGTC AATCGGCATC GTTGGTGCAA AGTGGAGTTA TCGCGATAGC GCTGTTGTCG
CAAACATTTC CTATCCTATT ACTCGGTTTA TACTGGAAAC GGGGCACCAG ATTAGCCGCG
CAGTTGGCTC TGGCCAGTGG CTTCCTTTGC TGGGCGTATT GGTTATTGTG GCCCAGTATT
ACCGCAAGCT ATTATTTCAA CGATGCTCCC TCAGACATTC AACTTGCACA AGGATTTGTA
TTCAGTTTAG GGGTCAATAT TGTGTGTTTT TTCTTGGTGT CTTTTATCCA AGGTATGCGC
AGCCAGAACA TGGTACACGA TGCCATTACT CACAATACCC AACCTTTTGG TCACGCGGTA
AAAGTATCAA ACCTATTAAC CATTACAGAG AGAGTATGGG GGGCTGAGCG TCACCAAGCA
TTACTGGATA AACTGACTCC AGTACAACTT GCGGGCTACG CTAGCCCCAA GCTGTTATCT
ACCATTGAAA GCGAACTTGC GGGGCAAGTA GGCAGTGCCA GTGCGCGTAT TTTGCTTTCT
GCCATCGGTG AGAAGCGGGA TGTTGAGCTG TCAGAGCTCG TAGAGTTGGT TGAAGAAGCT
AGCCAAACCT TTCAGTTTAA CCATGAATTA CTCCAATCGT CAGTGGAGAA TATTCAACAA
GGCATAGTCG TGCTTGACCG GGAACTAAAT TTGCTCGCAT GGAATCAGCG CTATGTTGAG
CTGTTTAACT ACCCCAGAGG TTTTGTACAA GTGGGTATGT CCATTTATCA ATTGCTAGAA
TTTAATGCCA AAAGAGGACT ATTTGGTCAT AACGCCGACA CGGGGCAAAG CAATATAGAA
ATGGAGATTA AAAAGCGCGT TGCCTTTATG CAATTAGGCA GCGCCTATAA ATATGTTCGT
CATCAAGAGA ATGGTCAGGT CATTGAATTA AATGGTCGTC CATTACCCGG TGGCGGCTTT
GTTACCACCT ACAGTGACAT TACAGAATAC ATCAATATTC AGCAGCAACT TGAACAGGCT
AAAACGAGCT TAGAATCCAG GGTTCAAGAA CGCACCGAGC AGCTACAAAT TGCCAATATT
GATCTTGAGA AAGCACGCCG CGATGCGGAA AGTGCTAACG ACAGCAAAAC CAAGTTCTTA
GCCGCTGCGG GTCATGATCT CATGCAGCCC TTCAATGCGG CTTCCTTGTT TGCCGCCATG
CTCAAACAGA AATCGCCCCC AGGAGAAATG GCAGAGATGA GCTCCAATCT GGTCGATTCA
CTGAGTAATG CTGAGTCTTT ACTGTCAATG TTACTCGACA TGACGCGTTT AGAATCAGGG
GCGTTGACGC CACATGTACA AACCTTTCCG TTAGACAGTA TTTTACGCCC CATGCTCAAT
GAATTTTCAG TGCTTGCGGA ACAAAAAAAG TTACGCGTAA CTTATGTACG CGCTAATTTA
TGTGTAATCT CCGACCCTAA GTTGCTAAGA AGAATAATAC AAAACCTATT ATCAAATGCT
ATCCGATATA CCGATTCTGG GCGTATATTA CTGGGCGTAA AAAGGCAAAA TGGTCAGGCT
AGAATATGTG TTATGGATAC CGGTGCCGGG ATAGCCGAAG ACAAACAGCA AGAAATATTT
CTGGAGTTTC ATCAGTTAGA CAGCAACCCT AGTGCTCAAG GTTTGGGCTT AGGTTTAACC
ATAGTCGAGC GTATCAGTGC CCTACTTAAT CACCCTGTAA CGTTACACTC AACGCTGGGC
AAAGGTACGT CATTTGATAT CGCCGTACCA ATAGGGAATA AACAAAATAA CTCTCCAAAA
ACAGCAGCCC GTGGAAGCAA TGATGTTAAC CTGCCGCTAC ATAACAAACG TGTGCTGATT
GTTGATAACG AGCCTCAGAT CCTAGACGCG CTACAACGGT TATTAGTTGA TTGGGGCGCA
ACCGTGATTG CAGCCAAAGA TACTAAAACT GCGCTGCAAT TACTCAATCA GCCGATAGAC
TTAATGATAC TCGATTACCA ACTCGACCAT GGTGAAACCG GTATAGATGT GGCCCACGCT
ATCAGGCAAG TATTTATTGG CGAAGCTGGC TTACACATTC CCAGTATTCT TAACTCTGCG
CGCCAAGATG AGCAAATTAG ACAACAAGCG ATAGATGAGC AAATGCATTA TTTACCAAAA
CCGCTTAAAC CTCTCGCTTT GAAAAGACTG ATTAAACAAC TGCTGGCTAA AAAATAG
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| Protein sequence | MRIPMFSVLS LMAIVVGYLL ILFLLAFWGD KRAKAHQQHP YIYSLALGVH CTSWAFFGTT
TQAAHYGWAF IPTYMGVICV FLFAHPILRR VANVCHQHNI SSLADFLSLR YDKSHFLAAL
VTLLCFIGVV PYIALQLDAV TGGIRVVTGA DNLWPDGVGF YVAVLMAIFA VLFGTRSLNL
TDKHPGLMFT VAFESVVKLA GLVIVGLFVC YSLYDGVFDL LGKAQLHQRA SETINADSGV
WVYASQMLLG VCSMFCLPRQ FHINFIENNG DKEITTARWL FPLYLLGMTL FVLPIALAGH
MLFPEGSVST DTYALALPVA SGNAWVTIIA FIGGLAAATS MIIVATLAMG VMISNNIATP
LWLTLQLRTQ QRHRLKPSSI LLIRRATVLV VLGVAYFYHV NISQSASLVQ SGVIAIALLS
QTFPILLLGL YWKRGTRLAA QLALASGFLC WAYWLLWPSI TASYYFNDAP SDIQLAQGFV
FSLGVNIVCF FLVSFIQGMR SQNMVHDAIT HNTQPFGHAV KVSNLLTITE RVWGAERHQA
LLDKLTPVQL AGYASPKLLS TIESELAGQV GSASARILLS AIGEKRDVEL SELVELVEEA
SQTFQFNHEL LQSSVENIQQ GIVVLDRELN LLAWNQRYVE LFNYPRGFVQ VGMSIYQLLE
FNAKRGLFGH NADTGQSNIE MEIKKRVAFM QLGSAYKYVR HQENGQVIEL NGRPLPGGGF
VTTYSDITEY INIQQQLEQA KTSLESRVQE RTEQLQIANI DLEKARRDAE SANDSKTKFL
AAAGHDLMQP FNAASLFAAM LKQKSPPGEM AEMSSNLVDS LSNAESLLSM LLDMTRLESG
ALTPHVQTFP LDSILRPMLN EFSVLAEQKK LRVTYVRANL CVISDPKLLR RIIQNLLSNA
IRYTDSGRIL LGVKRQNGQA RICVMDTGAG IAEDKQQEIF LEFHQLDSNP SAQGLGLGLT
IVERISALLN HPVTLHSTLG KGTSFDIAVP IGNKQNNSPK TAARGSNDVN LPLHNKRVLI
VDNEPQILDA LQRLLVDWGA TVIAAKDTKT ALQLLNQPID LMILDYQLDH GETGIDVAHA
IRQVFIGEAG LHIPSILNSA RQDEQIRQQA IDEQMHYLPK PLKPLALKRL IKQLLAKK
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