| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1980 |
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| Symbol | |
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| ID | 4172115 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2405193 |
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| End bp | 2407517 |
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| Gene Length | 2325 bp |
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| Protein Length | 774 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638054988 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_661552 |
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| Protein GI | 109898297 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.228726 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAAAC AACGATTCAC CCAATCCCTT ATCGCTGGCG CTGTTGCATC AGTGTTGTGT
TACCAACCAG CGTTAATGGC TCAAGAAGCA GATAACGCCA CTCAGGCTGA GAAAAAAGGG
CTAGAGCGTA TTGAAGTCAC AGCGCGTAAA ACCGTAGAAA GCCTGCAAGA AGTGCCTATT
TCTGTTACAT CTCTTGGTGC CGTTGAGTTA GATGAAAAGG GAATTTCGGT TATCACTGAA
ATCCAGCAAT TCTCACCCAA TACCACTTTG CAAAATAGCC GCGGCACCAA TTCGACGCTC
ACTGCGTTTA TTCGTGGTGT GGGCCAACAA GATCCACTTT GGGGTTACGA ACCAGGCGTG
GGTATCTACA TTGATGATGT TTACGTGGCG AGGCCTCAAG GCGCTGTATT AGATTTACTC
GATGTTGAAC GTATTGAAGT ACTCCGCGGC CCACAAGGCA CGCTATATGG TAAAAATACC
ATAGGCGGCG CGATAAAATA CGTGACGAAG CCCATGAGCG GCGACCCCAC CTTGAACATT
CAAGGCACCG TAGGCAGCTA TTCACAGCGG GATATCAAGC TTACTGGGCA GTTTCCCGTC
ATCGAAGACA AGCTTTATGT AGGTTTTGGG ATCGCAGATT TAACTCGCGA CGGGTATGGT
GAATACCTTG AATCGGCTCT TGAAGGGCAA GACTTAGAAA ACTACAACAA AGACTTAACC
GCGGCTCGGG TGACGGTGGA ATTTACCCCA TCAGATGATT TGTTTTTTCG CTTCGCGTGG
GACAAAACCG AAGATGACTC TAATGCCAAA GGCGGTTATC GCTTATTGCC AAGTCGTTTG
ACTGATGCCC CCGTACCCAA TAGCGTATTT GATTCTTACA CCAGTTTACC CACTGAAAAC
AATGTTGAGC TCGAAGGGTA TAGCTTGACG GCCAATTGGG ATGTAAATGA TGATATCAGC
TTAAAATACA TAGGCGCACA TCGTGAAAGT TACTCGCCAA CCAATATTGA TTTTGATAAC
ACAGCCATAG ATATTTTTGA TGTACCCGCC ATTTATGAAG ATGAAAATGA CACTCACGAA
CTGCAATTAG CATACGCCGG TGATGGGTTT AACGCCGTGG GAGGTATTTA TTATTATGAC
GGTGAATCGT GTGGTCAATT TGAAGCCATA CTGGGCTTTC TTGGTCGCGC CGCATTCGGC
GTACCTGGTT TAACCCGCGA AGTGTCTGGC TGTAACAACA GCGAAAGTAT TGCCGCGTAC
GTGCAGTCAT CTATTGATGT GACCGAGCAA CTGTCATTAA CCCTTGGCGC ACGTTATACC
GATGAAGAAA AGCAAGCCAC AGTTCGCAAT GGTCTAATTT TCGACAACGT ATACCCAGAG
TCGAACTGGA TCCCAGGTTA CGTGCGCCCA GAAGGTGAAA TAGTGCCACA AGTTTTGGGC
AGCGATTCTG ACGGTGACGG TATTTTGGAT GCTCCAGCAA AAGAAAGCTG GTCACGCTTT
ACACCCCGCG TAGGCGTTGA ATATCAAGTG GATAATGATT TGATGTTTTT TGCCAGTTAT
TCACAAGGCT TTAAATCTGG TACTTACAAT CCAAGAGCGA CCATCAACGA GCCAGCGGTC
GACCCAGAAG TAGTAGATTC GTTTGAGCTT GGCATGAAAA GCGACTGGAA CGATAATTTA
CGGGCAAATG TTACTTTATT CGCTTTAGAG CATAACGACC GCCAGTACAT CTCAGTGTTG
CCCGTTACGT CACCTGAAGA CTTACAACAA ATCTTGGGTA ATGTGGGTAA ATCTAAAGCC
AAAGGGGTTG AAGCTGAAAT TACTTATGCC GCTACCGATG AGCTAACCTT TGATGTGTCA
CTAGGGTACA TCGATGCTGA ATTTGAAGAG GTATTCCAAG AGACACTGGA AGGGCGAGTC
GATGTAGCCG ATACCTTTGC TATCTCGAAC ACTCCTGAGT ACACAGCCAA TTTCGCTGCT
AACTACCTAC TTAGCACAGA CATGGGCGAT TTTGTTTTTA ATGCTAACTA CTACTACCGT
GATGACTATA CGATTACGGA AACGTCAAAC AGTTTGATCA CCCAAGACGG ATACGGTTTA
GTCAACTTAA GCGTGTCGTG GCAAAGCGAG GACGGCAACT GGTATGGTGG CATTCATGCT
AAAAATCTGA CCGATGAGGA ATACGTAGTG GGTGGCTATC AGTTTGTGGT AGAAAACCCT
GATGATCCTA CAGGTTATAC AGCCGGCACA GGTGGTGATA ATACGTTAAT TGGTTATTAC
GGCGACCCAC GCACGATCAG CTTAACGGTT GGCTATCGCT TTTAG
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| Protein sequence | MNKQRFTQSL IAGAVASVLC YQPALMAQEA DNATQAEKKG LERIEVTARK TVESLQEVPI
SVTSLGAVEL DEKGISVITE IQQFSPNTTL QNSRGTNSTL TAFIRGVGQQ DPLWGYEPGV
GIYIDDVYVA RPQGAVLDLL DVERIEVLRG PQGTLYGKNT IGGAIKYVTK PMSGDPTLNI
QGTVGSYSQR DIKLTGQFPV IEDKLYVGFG IADLTRDGYG EYLESALEGQ DLENYNKDLT
AARVTVEFTP SDDLFFRFAW DKTEDDSNAK GGYRLLPSRL TDAPVPNSVF DSYTSLPTEN
NVELEGYSLT ANWDVNDDIS LKYIGAHRES YSPTNIDFDN TAIDIFDVPA IYEDENDTHE
LQLAYAGDGF NAVGGIYYYD GESCGQFEAI LGFLGRAAFG VPGLTREVSG CNNSESIAAY
VQSSIDVTEQ LSLTLGARYT DEEKQATVRN GLIFDNVYPE SNWIPGYVRP EGEIVPQVLG
SDSDGDGILD APAKESWSRF TPRVGVEYQV DNDLMFFASY SQGFKSGTYN PRATINEPAV
DPEVVDSFEL GMKSDWNDNL RANVTLFALE HNDRQYISVL PVTSPEDLQQ ILGNVGKSKA
KGVEAEITYA ATDELTFDVS LGYIDAEFEE VFQETLEGRV DVADTFAISN TPEYTANFAA
NYLLSTDMGD FVFNANYYYR DDYTITETSN SLITQDGYGL VNLSVSWQSE DGNWYGGIHA
KNLTDEEYVV GGYQFVVENP DDPTGYTAGT GGDNTLIGYY GDPRTISLTV GYRF
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