Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1980 |
Symbol | |
ID | 4172115 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 2405193 |
End bp | 2407517 |
Gene Length | 2325 bp |
Protein Length | 774 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638054988 |
Product | TonB-dependent receptor |
Protein accession | YP_661552 |
Protein GI | 109898297 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.228726 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATAAAC AACGATTCAC CCAATCCCTT ATCGCTGGCG CTGTTGCATC AGTGTTGTGT TACCAACCAG CGTTAATGGC TCAAGAAGCA GATAACGCCA CTCAGGCTGA GAAAAAAGGG CTAGAGCGTA TTGAAGTCAC AGCGCGTAAA ACCGTAGAAA GCCTGCAAGA AGTGCCTATT TCTGTTACAT CTCTTGGTGC CGTTGAGTTA GATGAAAAGG GAATTTCGGT TATCACTGAA ATCCAGCAAT TCTCACCCAA TACCACTTTG CAAAATAGCC GCGGCACCAA TTCGACGCTC ACTGCGTTTA TTCGTGGTGT GGGCCAACAA GATCCACTTT GGGGTTACGA ACCAGGCGTG GGTATCTACA TTGATGATGT TTACGTGGCG AGGCCTCAAG GCGCTGTATT AGATTTACTC GATGTTGAAC GTATTGAAGT ACTCCGCGGC CCACAAGGCA CGCTATATGG TAAAAATACC ATAGGCGGCG CGATAAAATA CGTGACGAAG CCCATGAGCG GCGACCCCAC CTTGAACATT CAAGGCACCG TAGGCAGCTA TTCACAGCGG GATATCAAGC TTACTGGGCA GTTTCCCGTC ATCGAAGACA AGCTTTATGT AGGTTTTGGG ATCGCAGATT TAACTCGCGA CGGGTATGGT GAATACCTTG AATCGGCTCT TGAAGGGCAA GACTTAGAAA ACTACAACAA AGACTTAACC GCGGCTCGGG TGACGGTGGA ATTTACCCCA TCAGATGATT TGTTTTTTCG CTTCGCGTGG GACAAAACCG AAGATGACTC TAATGCCAAA GGCGGTTATC GCTTATTGCC AAGTCGTTTG ACTGATGCCC CCGTACCCAA TAGCGTATTT GATTCTTACA CCAGTTTACC CACTGAAAAC AATGTTGAGC TCGAAGGGTA TAGCTTGACG GCCAATTGGG ATGTAAATGA TGATATCAGC TTAAAATACA TAGGCGCACA TCGTGAAAGT TACTCGCCAA CCAATATTGA TTTTGATAAC ACAGCCATAG ATATTTTTGA TGTACCCGCC ATTTATGAAG ATGAAAATGA CACTCACGAA CTGCAATTAG CATACGCCGG TGATGGGTTT AACGCCGTGG GAGGTATTTA TTATTATGAC GGTGAATCGT GTGGTCAATT TGAAGCCATA CTGGGCTTTC TTGGTCGCGC CGCATTCGGC GTACCTGGTT TAACCCGCGA AGTGTCTGGC TGTAACAACA GCGAAAGTAT TGCCGCGTAC GTGCAGTCAT CTATTGATGT GACCGAGCAA CTGTCATTAA CCCTTGGCGC ACGTTATACC GATGAAGAAA AGCAAGCCAC AGTTCGCAAT GGTCTAATTT TCGACAACGT ATACCCAGAG TCGAACTGGA TCCCAGGTTA CGTGCGCCCA GAAGGTGAAA TAGTGCCACA AGTTTTGGGC AGCGATTCTG ACGGTGACGG TATTTTGGAT GCTCCAGCAA AAGAAAGCTG GTCACGCTTT ACACCCCGCG TAGGCGTTGA ATATCAAGTG GATAATGATT TGATGTTTTT TGCCAGTTAT TCACAAGGCT TTAAATCTGG TACTTACAAT CCAAGAGCGA CCATCAACGA GCCAGCGGTC GACCCAGAAG TAGTAGATTC GTTTGAGCTT GGCATGAAAA GCGACTGGAA CGATAATTTA CGGGCAAATG TTACTTTATT CGCTTTAGAG CATAACGACC GCCAGTACAT CTCAGTGTTG CCCGTTACGT CACCTGAAGA CTTACAACAA ATCTTGGGTA ATGTGGGTAA ATCTAAAGCC AAAGGGGTTG AAGCTGAAAT TACTTATGCC GCTACCGATG AGCTAACCTT TGATGTGTCA CTAGGGTACA TCGATGCTGA ATTTGAAGAG GTATTCCAAG AGACACTGGA AGGGCGAGTC GATGTAGCCG ATACCTTTGC TATCTCGAAC ACTCCTGAGT ACACAGCCAA TTTCGCTGCT AACTACCTAC TTAGCACAGA CATGGGCGAT TTTGTTTTTA ATGCTAACTA CTACTACCGT GATGACTATA CGATTACGGA AACGTCAAAC AGTTTGATCA CCCAAGACGG ATACGGTTTA GTCAACTTAA GCGTGTCGTG GCAAAGCGAG GACGGCAACT GGTATGGTGG CATTCATGCT AAAAATCTGA CCGATGAGGA ATACGTAGTG GGTGGCTATC AGTTTGTGGT AGAAAACCCT GATGATCCTA CAGGTTATAC AGCCGGCACA GGTGGTGATA ATACGTTAAT TGGTTATTAC GGCGACCCAC GCACGATCAG CTTAACGGTT GGCTATCGCT TTTAG
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Protein sequence | MNKQRFTQSL IAGAVASVLC YQPALMAQEA DNATQAEKKG LERIEVTARK TVESLQEVPI SVTSLGAVEL DEKGISVITE IQQFSPNTTL QNSRGTNSTL TAFIRGVGQQ DPLWGYEPGV GIYIDDVYVA RPQGAVLDLL DVERIEVLRG PQGTLYGKNT IGGAIKYVTK PMSGDPTLNI QGTVGSYSQR DIKLTGQFPV IEDKLYVGFG IADLTRDGYG EYLESALEGQ DLENYNKDLT AARVTVEFTP SDDLFFRFAW DKTEDDSNAK GGYRLLPSRL TDAPVPNSVF DSYTSLPTEN NVELEGYSLT ANWDVNDDIS LKYIGAHRES YSPTNIDFDN TAIDIFDVPA IYEDENDTHE LQLAYAGDGF NAVGGIYYYD GESCGQFEAI LGFLGRAAFG VPGLTREVSG CNNSESIAAY VQSSIDVTEQ LSLTLGARYT DEEKQATVRN GLIFDNVYPE SNWIPGYVRP EGEIVPQVLG SDSDGDGILD APAKESWSRF TPRVGVEYQV DNDLMFFASY SQGFKSGTYN PRATINEPAV DPEVVDSFEL GMKSDWNDNL RANVTLFALE HNDRQYISVL PVTSPEDLQQ ILGNVGKSKA KGVEAEITYA ATDELTFDVS LGYIDAEFEE VFQETLEGRV DVADTFAISN TPEYTANFAA NYLLSTDMGD FVFNANYYYR DDYTITETSN SLITQDGYGL VNLSVSWQSE DGNWYGGIHA KNLTDEEYVV GGYQFVVENP DDPTGYTAGT GGDNTLIGYY GDPRTISLTV GYRF
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