| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1966 |
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| Symbol | |
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| ID | 4172101 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2383917 |
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| End bp | 2387639 |
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| Gene Length | 3723 bp |
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| Protein Length | 1240 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638054974 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_661538 |
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| Protein GI | 109898283 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00321927 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCACGCTA ACCAAGCCAT GGCGATTAAC GACATTTATA ATTACCGGGA ACAATTAACT
ATGTCTAAAG CATTCACCAC ACCCTTTAAA TTAAGCGCTA TCTCAATTGC GCTTTTTATG
GCATCTAACG CATTTGGCCA AACGCAGGAA GAACAAAACG CGCTGAATTC ACCTGAAGCG
AAATCTAGCG AAACAAGCGA CATTGAAGTG ATTGAAATTA CAGGTTTGAA GAGTAGCCTC
AAAAAATCAA TCAATGATAA GCGCTTCTCT CAGAACTTAG TCGACACAAT TAATGCCGAA
GACATTGGTA AGTCGACCGA CCAAAACGTA GCAGATGCAT TAAGCCGCGT AACGGGCGTT
TCATTGGTTA CGCGTGATGG CGAAGGTACT CAAGTCACCG TGCGTGGTGC CACTGCTAAC
CAAAATAATA TTACTATTAA TGGTCAGCAA CTCACCTCAA CAGACTTCAG TCAAGCGGTT
GATTTAAGCT CCTTCTCTGC AGACATTTTG TCAAAGCTTG AAGTGGTGAA AACATCAAGT
GCCGACCAAG ACGAAGGATC TCTGGGGGCC AATATTAACC TCATAACACT CAAGCCTCTT
GATCAAAAGA AAGGCGTGCG TTCCTTCACT GCACAGGGCA GATACAATGA TTTCTCGGAA
GAGAGCGATC ATAAAGTACA GTTTACCCTC ACTGAAAAAT TTTTCGATGA TACCTTTGGT
GTTGCCTTTT CAGCCTATGA TCAAACTTCA AGTATTCGGC GCGACCAATA CCGAATAGAC
AGATTCGCAG CTTCTACTAT TATCGCATCA GCAAGCGACA TGGACGGAAA TGCCATCTCT
GGCGTCAAGG CGATACGCCC TACGGCCACG CGTTACGAAC TGCATCAAAA TAGCACCGAA
CGTCAGGGCA TAACCTTAGG GCTGCAATTT CTACCAGACG ATGTTTCTGA ATTGAATCTT
GATATTACTT ACTCACAGCA AGAATATGCA ACACGTCAAG ATGCCGTAAT AAGTCGAGCT
ACGGGCAATC AAAATTTTGT CGAAGGCATT GAGCCGCTAG GCAGTCAACG TCCTGCAGCG
CCCTTCACCG ATCCACAAAC AGATTGGTAT GTAGTCGATA CACAGAACAA TACCATGCTA
CGAGAATTGA ATCGTTTCGG TGCAGGTGAC TTACAATCCT CACAAGGCGG TAATGATCAA
AAAAATGGCA GCATCTCATT AACGTACAAA CGTGAATTAA CCGACTCTCT TCGTGTCTCA
AGCCAATTTG GTTACTCCAA AAGTGAATCA GAAAGTTTAC CCAGTGCATT TGCAGCGATG
CAAAATTTCC CCCAGGTGCC CGCGATAAAA CTCTATGATG CAGGCCGAGA TATCGAACCT
GTTGGTTATG ACTGCACTAG CGGAACGTGT CGCATGGTAT TTGGCAGTTC ATTTGCTGAT
CTTGGCGAAC AAATTGTCAG TCAAACCGAT CCGGAAACTG GCTTATTTGT CCCCGGATAT
GAAGATAATA CTGTATTCAC GGGCTACAAC CCCGCAGATA TTAACGCACA GCATTTGAGC
TTCTTAAGTG AAAATGACGT AACAGTGAGC GATGAGTTGG CAAATGGCCA AGTCGATTTT
GAATATGACT TTGATGATTA TGGCATTACC TCGTTCGAGT TTGGCGCTAA AGTTACCAAA
CGTACGAAAG ACGTGGATAA TCAAAAATAC CAATTTAACT CAGTCACAGC CACAGAGGTC
GTCGAGGACG AATTTGGTAA CCCCGTTGCT ATTCCAGGCG GCGCGTTATT AGACATTCGC
GCTAATTTGA TAGCACGTGA CGGTGTCGTA CCCAGCGACT TCATGCAGTC ATTGGGTTAC
GAGCGCAATG AGGCCACAAC CGGTTGGACG CCAGTAGACC CAGCCTACGC CGTTAGCCTG
CTGTTAGACG ATGAAAACAC CGTAAGAACG CCCAATGACT CCGAATCACG GATCACAGAT
ATCGATACGC AAGCCTATTA CTTTAAAACT AATTTTGAAT TATTTGATGG TCGTTTGACC
GGTAATATCG GTATGCGCTA CGTGAAAACT GACATCGCAG CAGAGGGCTA TTCAGGCGCT
GACTTCTGGC AGTTTACTGA GACACTTGAG CGAGAATACG ACCGCGTTAT GTTGCGTGAC
TTGCGAGACA CAAGTCTGCC TGAGTGCCGT TCACCTGTTT TCGCAGATCC GAATCAACCG
CTAGGTTATG AGCAAAAATA CCAACGGGTT GATGGTCAAG GTTGGGATAC CAGCAGTGGT
CCTGATCCCT CTGGTTGGAC TCGCATTGCG GATCAGGGCC CTTGTCATGA CCCTCTATTT
GCCCAGTGGT CTGCATTTCA GCAGGACCCA AGCTTACCCG AGCCAGCAGA CCCGATCACT
TGGTTAAATA TGTGGCGCTA CGCTGACGTA TCGACCACCC GCAATAATGG CTGGGATGGC
ACGATTGCTT ACGATGGGAC GACCCCAATT CCAACCGTAA ATGCCAATCA ATTTTCGTCG
TCATCGATTC GAAACAGAGA GCTTCAATCA TTTCGCTCTA GCGACAGCCA CACCTATACA
AATTGGTTGC CAAGTCTAAA TTTAAACTAC GCTATTTCTG ATGAAATGGT CGGCCGTTTC
TCGGTTTCTA AAACGATGAC CCGTCCTGAA ATAGACCAGC TTCGCCCAGG ATTTCAATTG
AACGAAAACG GTTATTGGGG CTCAGGTAAT CCGAACACCG GTAGTAAAGT TTCATTGTTC
AACACCCAGC TTGAACCGTT AGAGTCCAAC AATTTAGACG TATCATTTGA GTGGTACTTT
AACGAAAGCT CTATGCTCAG TGTGGCAGTA TTCCATAAGG ATATGTCAAA TTTTACCACG
GTTGAAAATG CAGTTACTTA TCTAAAAGAT GTGCGTAACG TTGACACCCC AGTTAGCGGC
AGCGAAATCA TTTTGCTCGC CGAAGACGAT GGAACAGATG ATCATGGATT AAACGGTTGT
ATGCCGCTTC GCGCAACAGC TGATTACGGT TGGTGGCCTT CGGACCCTAC CCGCTTCAGT
AACGATTTGC GTGATCTGTG TGCCCAATAC AGCGTCAGCA AAATCATCAA CGGTAAAGGT
GCTCAAATTA CCGGTGTGGA ATTAGGCTAT GTACAAACCT ACGACTTTTT ACCTGGCTTT
TTATCTGGCT TAGGGGTGTC GGCTAACTAT ACCTATCAAG ACAGTCAGTA TGATCCAGAC
CGTTCCAGCA TTGACCCAAG CAAAACCTTA CCGTCATTCC CTGTGGCCGA TACACCTGAG
CACAGCTACA ACGCGACCCT ATTCTGGGAG CAAGACGGCC ACCAGATCCG CTTAGCGTAC
CGAGGTACCA GTGACTCACT TGTGGGTACT GATTACAACA CGGGCTTACA AGGGCGTACA
TGGAACCAAG GCTCTATTTG GAACGAAGGT CGCGGTAACC TCGACTTGTC AGCATCTTAC
AAACTAAACG ATAACGTTAC CTTTTCATTG CAAGCCATCA ACTTGCTCGA TGATGAATTT
AGAACCTACT ACACCAGCCG AGAATTAGAA GTAGACCGCA TTTTCGCTGA CAACGATGTG
GGCTATCAAT TCGTTGCCTT TGAAGAAGGT AACCCGTTAG ACGGAGACGC GACACGTTCG
CGCACATACA CACGTTATAA AGTCGGCACG ACTTATCGCT TAGGTGTGAA CGTTACGTTT
TAA
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| Protein sequence | MHANQAMAIN DIYNYREQLT MSKAFTTPFK LSAISIALFM ASNAFGQTQE EQNALNSPEA
KSSETSDIEV IEITGLKSSL KKSINDKRFS QNLVDTINAE DIGKSTDQNV ADALSRVTGV
SLVTRDGEGT QVTVRGATAN QNNITINGQQ LTSTDFSQAV DLSSFSADIL SKLEVVKTSS
ADQDEGSLGA NINLITLKPL DQKKGVRSFT AQGRYNDFSE ESDHKVQFTL TEKFFDDTFG
VAFSAYDQTS SIRRDQYRID RFAASTIIAS ASDMDGNAIS GVKAIRPTAT RYELHQNSTE
RQGITLGLQF LPDDVSELNL DITYSQQEYA TRQDAVISRA TGNQNFVEGI EPLGSQRPAA
PFTDPQTDWY VVDTQNNTML RELNRFGAGD LQSSQGGNDQ KNGSISLTYK RELTDSLRVS
SQFGYSKSES ESLPSAFAAM QNFPQVPAIK LYDAGRDIEP VGYDCTSGTC RMVFGSSFAD
LGEQIVSQTD PETGLFVPGY EDNTVFTGYN PADINAQHLS FLSENDVTVS DELANGQVDF
EYDFDDYGIT SFEFGAKVTK RTKDVDNQKY QFNSVTATEV VEDEFGNPVA IPGGALLDIR
ANLIARDGVV PSDFMQSLGY ERNEATTGWT PVDPAYAVSL LLDDENTVRT PNDSESRITD
IDTQAYYFKT NFELFDGRLT GNIGMRYVKT DIAAEGYSGA DFWQFTETLE REYDRVMLRD
LRDTSLPECR SPVFADPNQP LGYEQKYQRV DGQGWDTSSG PDPSGWTRIA DQGPCHDPLF
AQWSAFQQDP SLPEPADPIT WLNMWRYADV STTRNNGWDG TIAYDGTTPI PTVNANQFSS
SSIRNRELQS FRSSDSHTYT NWLPSLNLNY AISDEMVGRF SVSKTMTRPE IDQLRPGFQL
NENGYWGSGN PNTGSKVSLF NTQLEPLESN NLDVSFEWYF NESSMLSVAV FHKDMSNFTT
VENAVTYLKD VRNVDTPVSG SEIILLAEDD GTDDHGLNGC MPLRATADYG WWPSDPTRFS
NDLRDLCAQY SVSKIINGKG AQITGVELGY VQTYDFLPGF LSGLGVSANY TYQDSQYDPD
RSSIDPSKTL PSFPVADTPE HSYNATLFWE QDGHQIRLAY RGTSDSLVGT DYNTGLQGRT
WNQGSIWNEG RGNLDLSASY KLNDNVTFSL QAINLLDDEF RTYYTSRELE VDRIFADNDV
GYQFVAFEEG NPLDGDATRS RTYTRYKVGT TYRLGVNVTF
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