Gene Patl_1961 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1961 
Symbol 
ID4172096 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp2377004 
End bp2377786 
Gene Length783 bp 
Protein Length260 aa 
Translation table11 
GC content44% 
IMG OID638054969 
Productphytanoyl-CoA dioxygenase 
Protein accessionYP_661533 
Protein GI109898278 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG5285] Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00281638 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTAACA TCACTTTAAC TGAGCAACAA ATTGCTGACT TTCATCGCGA TGGTTATGTT 
ATCGCTCGCG GCTACTACAG CCCTGAGGAA ATAGATCGTT TACAAGAAAA AGCATTTAAC
GATGATTCGT TAAATGATCG AGCATGGCAC AAGAAAGACG CGGGCGGCGC GGTAAGTAAA
GTGTGCTTGT GGCAAGAAAC CGGCAACGAC TTATACAGTA TGTTTTCACG TAGTCGCCGT
TTATCTGATG TGTGTGAAAC CCTTATCGGT GAGCCGATTT ACCACACCAG CACTAAGATC
ATGATGAAAG AGCCCTTTGT AGGTGGAGCG TGGGAATGGC ATCAAGATTT TGGTTATTGG
CACCGTGACA ACTATATGCT TTACCCAAAA GCGATCAGCT GCATGGTGGC GATTAACCGC
GCAACGGTTG AAAACGGCTG CTTACAAGTA TTAAAAGGCT CACACCATTT AGGCCGTTTA
GATCACAATA AAACCGGCGA CCAAAAAGGG GCTGCCCTCG ACTTTGTTGA GGAAGCAATG
AAATTTCACG AGTTAGTGAA TGTAGAGCTT GAACCTGGTG ATGTATTGTT TTTCCATTGT
AATTTGTTGC ACAAGTCAAA TCAGAACCGT GCAGCGGAGC CTCGTTGGTC GATGATCTGC
GCTTATAACG CCATCAGCAA CCAATCTTTT GCAGAAAATG AAGCTAAATT CTATCCGTTT
AGCCCTGTCG CTGATGACGC TATTATCAAT TGGCAAGAAA CTGAAGAAGC TAAGGCCTCT
TAA
 
Protein sequence
MSNITLTEQQ IADFHRDGYV IARGYYSPEE IDRLQEKAFN DDSLNDRAWH KKDAGGAVSK 
VCLWQETGND LYSMFSRSRR LSDVCETLIG EPIYHTSTKI MMKEPFVGGA WEWHQDFGYW
HRDNYMLYPK AISCMVAINR ATVENGCLQV LKGSHHLGRL DHNKTGDQKG AALDFVEEAM
KFHELVNVEL EPGDVLFFHC NLLHKSNQNR AAEPRWSMIC AYNAISNQSF AENEAKFYPF
SPVADDAIIN WQETEEAKAS