Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1961 |
Symbol | |
ID | 4172096 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 2377004 |
End bp | 2377786 |
Gene Length | 783 bp |
Protein Length | 260 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638054969 |
Product | phytanoyl-CoA dioxygenase |
Protein accession | YP_661533 |
Protein GI | 109898278 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG5285] Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00281638 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTAACA TCACTTTAAC TGAGCAACAA ATTGCTGACT TTCATCGCGA TGGTTATGTT ATCGCTCGCG GCTACTACAG CCCTGAGGAA ATAGATCGTT TACAAGAAAA AGCATTTAAC GATGATTCGT TAAATGATCG AGCATGGCAC AAGAAAGACG CGGGCGGCGC GGTAAGTAAA GTGTGCTTGT GGCAAGAAAC CGGCAACGAC TTATACAGTA TGTTTTCACG TAGTCGCCGT TTATCTGATG TGTGTGAAAC CCTTATCGGT GAGCCGATTT ACCACACCAG CACTAAGATC ATGATGAAAG AGCCCTTTGT AGGTGGAGCG TGGGAATGGC ATCAAGATTT TGGTTATTGG CACCGTGACA ACTATATGCT TTACCCAAAA GCGATCAGCT GCATGGTGGC GATTAACCGC GCAACGGTTG AAAACGGCTG CTTACAAGTA TTAAAAGGCT CACACCATTT AGGCCGTTTA GATCACAATA AAACCGGCGA CCAAAAAGGG GCTGCCCTCG ACTTTGTTGA GGAAGCAATG AAATTTCACG AGTTAGTGAA TGTAGAGCTT GAACCTGGTG ATGTATTGTT TTTCCATTGT AATTTGTTGC ACAAGTCAAA TCAGAACCGT GCAGCGGAGC CTCGTTGGTC GATGATCTGC GCTTATAACG CCATCAGCAA CCAATCTTTT GCAGAAAATG AAGCTAAATT CTATCCGTTT AGCCCTGTCG CTGATGACGC TATTATCAAT TGGCAAGAAA CTGAAGAAGC TAAGGCCTCT TAA
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Protein sequence | MSNITLTEQQ IADFHRDGYV IARGYYSPEE IDRLQEKAFN DDSLNDRAWH KKDAGGAVSK VCLWQETGND LYSMFSRSRR LSDVCETLIG EPIYHTSTKI MMKEPFVGGA WEWHQDFGYW HRDNYMLYPK AISCMVAINR ATVENGCLQV LKGSHHLGRL DHNKTGDQKG AALDFVEEAM KFHELVNVEL EPGDVLFFHC NLLHKSNQNR AAEPRWSMIC AYNAISNQSF AENEAKFYPF SPVADDAIIN WQETEEAKAS
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