| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1943 |
|---|
| Symbol | |
|---|
| ID | 4172078 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 2360378 |
|---|
| End bp | 2361640 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638054951 |
|---|
| Product | transposase, IS4 |
|---|
| Protein accession | YP_661515 |
|---|
| Protein GI | 109898260 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTTTA TCAAGAAAGA GGATTTCGCC AAAAACCAAC TAGATAACAA CACCATGCGT
GATATTCATA TCTTACACGA TTTGCTTAAA AAACAATGCC CTAATCTACA TGCCAAACGT
CTTTCCTCTT TGATGGTTGC CACCCAATCT TTGCTAGATG GCCAGCACCT ATCGTTGACC
GAATTAGGAC GCAATATCTC AGGCTCCGTG GCCCCGAAAC ACAACATTAA ACGCATCGAC
AGGCTGCTTG GTAATAACAA CCTACATAAT GAACGGCTCG ACATCTATCG TTGGCACGCT
CGCTTGCTTT GCGGTGCTAA CCCCATGCCC GTTGTCCTTG TGGATTGGTC TGATGTGCGT
GAGCAGCTCA GGCATTTAAC CTTACGTGCA TCGGTCAGTG TTCAGGGGCG CTCTGTCACG
CTTTATGAGC GCGTATTTTC GTTCGGTGAA TACAATTCAC CTGTTAGTCA TAATCCGTTT
TTACGGGAGT TGGCGAGTAT CCTGCCGTCG GGTTGTTGCC CGTTGATTGT GACCGATGCA
GGCTATCGTA ACCCTTGGTT TCGTGAAGTC GAAAAGCATG GATGGTTCTG GCTAGGCCGA
GTGCGCGGTG ATGTGGGATT TAAGCGTGAT GGGCAAGCAT CATGGCAAAG TAATAAGTCG
TTTTATCCCA GTGCAAATTC TCGCGCCAAA TACCTTGGGT GTGGGCAATT AGGGCGTAAA
AGCCCGCTTC ATGCACACCT GCATTTGTAC AAAGCAAAGG CCAAACATCG AAAGGACAAC
CGTTCTTCAA AGGCAGGTCG AAACCACACC GCCCAGCAAA GCTATCGTGC GGGTAGTAAA
GAGCCTTGGC TACTCGCCAC TAACCTTCCC GAGAACGATA AGCTTAACTC AAAACAGCTG
GTTTCCCTTT ACGCAAGACG GATGCAAATA GAAGAAACCT TCCGTGATAT TAAAAGCCCT
CAATACGGAA TGGGACTGCG CCACAGCAAC AGTCGCAGTA CCAAACGATT CGACATATTA
CTGCTGATAG CGATGCTCGC AGAATGGCTA TTGCGGTTAC TCGGTATCAT TGCTCAAAAA
CAAAATTGGG AAAGAGCATT TCAAGCTAAC ACCATCCGTC ATCGGCGCGT GTTATCTATC
ATTAGGCTAG GCAGAGAAGT CAGGAAAAGG GCAAAAGATT ACAGGATGAA CTCAGCCCAA
ATGACATGGG CTATCGCCCA ATATATTACC TGGGTTCACA AAGAAGGAAG ACCAATTCTA
TGA
|
|---|
| Protein sequence | MSFIKKEDFA KNQLDNNTMR DIHILHDLLK KQCPNLHAKR LSSLMVATQS LLDGQHLSLT
ELGRNISGSV APKHNIKRID RLLGNNNLHN ERLDIYRWHA RLLCGANPMP VVLVDWSDVR
EQLRHLTLRA SVSVQGRSVT LYERVFSFGE YNSPVSHNPF LRELASILPS GCCPLIVTDA
GYRNPWFREV EKHGWFWLGR VRGDVGFKRD GQASWQSNKS FYPSANSRAK YLGCGQLGRK
SPLHAHLHLY KAKAKHRKDN RSSKAGRNHT AQQSYRAGSK EPWLLATNLP ENDKLNSKQL
VSLYARRMQI EETFRDIKSP QYGMGLRHSN SRSTKRFDIL LLIAMLAEWL LRLLGIIAQK
QNWERAFQAN TIRHRRVLSI IRLGREVRKR AKDYRMNSAQ MTWAIAQYIT WVHKEGRPIL
|
|---|
| |