| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1940 |
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| Symbol | |
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| ID | 4172075 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2351338 |
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| End bp | 2354370 |
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| Gene Length | 3033 bp |
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| Protein Length | 1010 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638054948 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_661512 |
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| Protein GI | 109898257 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAGAT TTACACCGAA TTTGATTACC GCGGCGTTGC TGGCAAGTGG CACTGCGTTT
ATCGCATGTT CAGCAGTAGC ACAGCAATCG GTAGATGAAC CAATCACAGC AGGGACCGTC
AGTGAAAATG ACGAACAAAA ACAAGGCCAG GAACTCGAGC GCATAGAGGT CAGAGGCTTT
GCCACCAGTT TGATCCAGTC ACTTAACCAA AAACGTTTTA GTGATACGGT ATCCGAGCAA
ATTTCAGCAG ATGACTTGGG CGGCTTGCCC GATGTGTCCA TGGCAGATGC ATTGACTCGA
TTACCCGGTA TTTCAGCTGT AAGAACTGGC GGCCAAGCAG CAGAGATCAA CATTCGTGGT
ATGTCGGGAG ACTTTGTATT CTCGACCCTC AATGGCCGCG AGCAAGTGTC TACCAGTGGC
TCGCGCTCTA TTGAGTTTGA CCAATATCCT TCAGAGCTGA TTTCATCGGC TGCAGTGTAT
AAATCCCCTA AGGCTTCGCT GATTGAAGGC GGTGTGGCCG GTAGCGTGGA GCTGCAAACA
GCTAGCCCGT TAAGTAACGA TCAACAACAC ACGTTTAATG TTAACGCTCG AGGTATGTTT
AACGACAGAG CAGGCGAGGT GTCTGATGCG GAAGAGTTTG GCCATCGTTT AAGTTTGTCT
TATCAAGGTA AGTATTTAGA CGATACCTTA GGGGTAGCCC TTGGCTACGC ACGCTTATTT
CAGCCAAGTG TGTCAACCCA ATTCGTTGGC CTTGCCTATA ACGCCACTAA AGACGTGGAT
AATGATGGTG ACGAAGAGTT TCTAGGCGAG GGCTTTGAGT TACAACACAA AGGTGGCGAA
GAAACCCGCG ACGGTTATAT GGGCGCGATT GAGTGGACGC CTGTTGATAC CTTTACCCTA
AAGGCGGATG CGTTTTTCTC AAAATTTGAC TCTGAAGAAT TCGCCCGTGG GTTTCGGGTC
AAGCTAGGCG GTGCATCTGC TGCTGTAGCC AACCCTGTGC TCAATGGTAA CGCTGTAATA
GGGGGTACGT TTAATCGCAC ATCACAAAGC TTTACCCGTG TGGAGTTGGT TAACGATGAC
AACCAAGACT ATGACCAAGT GTCCAGCTAT GGCATTAACG CCGATTGGCA AGCGACAGAC
AACTTAACCT TGGCATTTGA TGTGTCACAG TCAGTTGCTA AGAGTGACTT TAGAAATGGT
TTGTTATGGG CCCTAGTGGG GGAAGATGCC AATGCTGAGC TACCCGTTTT CGATAACGAC
ATCTCCATTA GTTACCTGTT GCACGGTTTA GATTTACCCG ATGTCGGCTT TAGCCAAGCC
GAGGCCTTCA CTGATTTAGA TAGGGTAATG GTCACAAAAT ACGGTATTTA CCCTTACGAA
AACGAAGATG AGCTGAACGC TTATCGCTTT GATTTGACCT ACGAAATAGA CGACAACGCT
TTTTTCTCTT CAGTTGAATT TGGTGCGCGT TACTCTGATC GTGAATACAG CAACGACCGT
TCAGTATTCG AATATGGCAG CGACTCTAGC TTTTCAGCCA GTCAACCGCC GCTGCGCTTA
ACGGACGATA TGGTGGATGT GGTCGATTGG GAAGGTGACT TTGGTTATTT GCCTAGCTAT
CTTTCTATCG ACTTAAATTC AGCGCTCAAT GCGTGGTTCC CCTCCGGCAT ACCGCAGCCA
GTTAAAACGT GGGGGGCAGG TAGCCCCGGC GTGATAAACG GACCGGGCGA GGGGCCTAAC
ACCAGCTGGA CCATGCTTGA AAGCGGTAAA GTGTTTGAAA AGGTCACCGC TGCATACATC
ATGGCAAACA TAGATACTGA GCTGTTTGGC TTGCCCGTTA CCGGAAACGT GGGTGTGCGT
ATGGTGGAAA CCGAGCAATC ATCTACAGTA CTGCAAGACG TGTCTGAAGA CATCATTGAC
CCAGATACAG GTGAAGTCAT TGATACCCGA GGTAACCCAG CCAACGGTGC TCAATTTATT
ACGGATGATG CGGGCTTGGT GAATGACTTT TATCGCCCAG CACTGCTGAC TGATAAATAC
CGAGATTACC TACCTTCAAT CAACCTGAAC GTTAAGCTGA CTGACAGTGA ACAGCTGCGC
TTTGCTGCGG CGAAAGTGCT TGGCCGAGCG CCGATTAATC GTTTGTTTGC CAACGCCACT
TTGCGGGTGG AAGACGTACA AGCCTTTCGT GACCAAGACA CAGGCGAGAT TGTTTTATCA
AAACCGACGG CAGTTATCTC TGGCAGTGCC ACGAACAGCC CGTACCTTCG CCCGTTCTAT
GCCGATCAAT ACGATATCTC TTACGAGAAG TACTTTGAAG ATACTGATGG TGCCTTCATC
GCGGCGTTAT TTTACAAAGA CATTAAGTCG TTCATCAATA CCTTTAAAGA AGACCCGTTT
GATTTCACCG GTAACGGATT CACCATCCCG GCAGACATTA CCGTACTGGT GACAGATGAA
GAGGGCGAGC CGTTATTTAA TGACGATGGT TCACGCTTAT CGGTGCAAGT ACCCACTGAA
AATGGTGGCT ATGAAACCGC CGTGAATAAC GACAAAGGCG GCTATATTCG CGGCGCTGAG
TTGTCATATA CGCAAATCTA TTCGTTTCTT CCTGACATGT GGTCGGGCTT GGGCATGAGT
GCCAGCTATT CCTACACAGA AAGTGAAATT CAAACCCAAA CCACATTAGG CGGTGCATCG
GTAGAGCAAA CCTTGCCAGG TTTATCTGAA AACGTCGTCG CGGCCACGGT GTTCTGGGAA
TACGAAGATT TCGAAACTCG ATTAAGTGTG CGTTGGCGTG ATGCGTTTGT GTCAAAGCAG
GTGGCGGTGA ATGAACAAGT GGTTAATTTC GATTCAGAAA CCGTGATTGA TTATCAGGCG
TCATACAACA TCAACGAGAA TCTCGGCATG TTGTTTCAAG TGAATAACCT GACCGACGAG
CCAACCAAAA GTTATTTCGG CAGTGAAGCG CAAACGGGGA CCATTCAGTA CTTTGGTCGC
CAGATATTTC TAGGCGTGAC GTACTCGCTT TAA
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| Protein sequence | MKRFTPNLIT AALLASGTAF IACSAVAQQS VDEPITAGTV SENDEQKQGQ ELERIEVRGF
ATSLIQSLNQ KRFSDTVSEQ ISADDLGGLP DVSMADALTR LPGISAVRTG GQAAEINIRG
MSGDFVFSTL NGREQVSTSG SRSIEFDQYP SELISSAAVY KSPKASLIEG GVAGSVELQT
ASPLSNDQQH TFNVNARGMF NDRAGEVSDA EEFGHRLSLS YQGKYLDDTL GVALGYARLF
QPSVSTQFVG LAYNATKDVD NDGDEEFLGE GFELQHKGGE ETRDGYMGAI EWTPVDTFTL
KADAFFSKFD SEEFARGFRV KLGGASAAVA NPVLNGNAVI GGTFNRTSQS FTRVELVNDD
NQDYDQVSSY GINADWQATD NLTLAFDVSQ SVAKSDFRNG LLWALVGEDA NAELPVFDND
ISISYLLHGL DLPDVGFSQA EAFTDLDRVM VTKYGIYPYE NEDELNAYRF DLTYEIDDNA
FFSSVEFGAR YSDREYSNDR SVFEYGSDSS FSASQPPLRL TDDMVDVVDW EGDFGYLPSY
LSIDLNSALN AWFPSGIPQP VKTWGAGSPG VINGPGEGPN TSWTMLESGK VFEKVTAAYI
MANIDTELFG LPVTGNVGVR MVETEQSSTV LQDVSEDIID PDTGEVIDTR GNPANGAQFI
TDDAGLVNDF YRPALLTDKY RDYLPSINLN VKLTDSEQLR FAAAKVLGRA PINRLFANAT
LRVEDVQAFR DQDTGEIVLS KPTAVISGSA TNSPYLRPFY ADQYDISYEK YFEDTDGAFI
AALFYKDIKS FINTFKEDPF DFTGNGFTIP ADITVLVTDE EGEPLFNDDG SRLSVQVPTE
NGGYETAVNN DKGGYIRGAE LSYTQIYSFL PDMWSGLGMS ASYSYTESEI QTQTTLGGAS
VEQTLPGLSE NVVAATVFWE YEDFETRLSV RWRDAFVSKQ VAVNEQVVNF DSETVIDYQA
SYNINENLGM LFQVNNLTDE PTKSYFGSEA QTGTIQYFGR QIFLGVTYSL
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