| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1938 |
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| Symbol | |
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| ID | 4172785 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2346243 |
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| End bp | 2349158 |
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| Gene Length | 2916 bp |
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| Protein Length | 971 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638054946 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_661510 |
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| Protein GI | 109898255 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0886775 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAATT TTAAACCTAA TTTAATCAAG GCCGCGCTAA TCACTAGCGG TTTTGCGTTT
GGTATAACAC CCACAGCATT TGCTCAAGAA GCAGCTGCAG ATGCCCCAGG GAATGACACA
GAAGTTATTC AAGTTACGGG TATTCGCGGG TCTCTTATCC GTGCCCAAGC AGTAAAAATG
GAAAACACCT CGATTGTTGA AGCCATTTCA GCTGAGGATA TTGGTAAATT ACCAGACTCG
TCTATCGCTG AGTCGTTAGC GCGTTTGCCT GGTATGTCAG GTGAAAGGGT AGGCGGTCGT
ACTTCAGGTA TCTCTGTTCG TGGATTTAAA GAAGACTTTA CTGGTACCTC ACTTAATGGT
CGCGAGTTAA TCGGCATTGG TGATAACCGA GGTGTAGAAT ACGATTTATA CCCTTCAGAA
ATCATGACCG GAGCCACAAT TTATAAGACC GCAGAGGCCG GCCTTATGGT GCAAGGCATT
GGGGGTACGG TTGATTTACA AACTGTTCGC CCATTACAGG CTCAAGAAAC CTTAACCATT
AATGGTAACT ATGAATTATC GGGTCGAGAC TCTGACAACC CCGAGTTTGA CAACACTGGC
CATCGCTTAT CTTTGTCATT TGTTGAAAAG TTTGCCGACG ACACCATTGG CTTGGCCGTT
GCACTCGCCA GCACAGAATC GCCAAACAAC CAGCGTAAAT ATGGTGTGTG GGGATATAAC
ACCAATGATG AAGGTCAAGT AACGCCATCT GGCCTAGATA GCCAAGCTAT CAGCACCGTT
CTTGAGCGAG ACACTATCTC TGCTGTGTTG CAATTCCAGC CGACAGAAAA CCTAGACATA
GTGATTGATG CACTTGATAT AAGCTACTCA GATTCTGGTG TTATTCGCGG CTTTATTGAA
CCTTTCTCTG CTGGCAGTAT TTCAGGCACA GGTACCGAGA CTACAGGTAC TCAAGTTGGT
GTTAACCCGG TCCTACGAAC TGATCCATCT CAGAAGGACG GTGATTTACA GGTATTTGGT
TTAAATGTTC AATACCATTT GAATGACAGT TGGTCAGTAG AAGTTGACGT AGCGAATAGT
GAGTCTACGA AGCGTGATTT GCGCGGAGAG TCATACGCAG GCTTAGCGCG CTCTGGCGCA
CTAGATTCTT CAGGGTTAGG CACGCGTGAT TTTGTGATGA GTCAAGATGG GATCACCTTT
ACTGACTCTT CTGGTTTAGA TGCATTCTCT GATCCAAGTG CTTTGCAACT GACAGGCCCA
CAAGAGTGGG GTGGTGGTTT AGCTAATTTA GCGGATCAGT TTACTAGCAC TGAATTAACC
GCCAATGGAG CTCCTTATAG TTACTTGAAT GCCCAGGACG GGTTTTTGAA TTATGCTGAT
TTCAGCGAAG AGTTGACCAC CTATAAGTTT GAAGTGGTGG GATTGTTGGA TGGTGATATC
TTTACTCAAG TAACAGCGGG TGTTAATTAC AGTGACAGAT ATAAAGACAA AGAAAATAAA
GGTTTCTTTG CTACATCGTC ATCATACCCA GCCTCTACTG CTATTCCTCA AGCGTATTTA
TACAATGGTT TAGCCGATTT AACCTGGGCG GGCATGGGAT ATGTTGTTGC ATATGATGGT
TTTGCACCAT ACAACGATGG CGAATATACC TTAAATGATG CGGGCTTATT AGAGCCGGAT
CGTTTAGGCG ATACCTATGT AGTAGAAGAA GAAGTCACCA CTTTGTATGC AAAAGTCGAT
TTCAATACTG AACTGGGTGA TTTTCCTGTT ATGGGTAACA TCGGTGTTCA GTATGTACAA
ACAGATCAAT CCTCTTCTGG TTTTACAGGT GTGGTTGGGT CAAATTTTGC CGTGTGTGAT
GCAAATAACG ATCAGCAAAT AGATGACGAC TGCCGAACAT CTGTTAGCTC AGACTATAGC
CATGTTTTGC CAAGTCTGAA CGTCAGTGTA GAAGTGGCAG ACAACAAGTT TGTGCGTTTC
GCTGCGAATA AGACGATCAG CCGTGCACGA ATTGACCAAA TGAAGGCCTC TGGTTTTGTG
AAGTTCGACC AAAACATCGA TTTGTTGTCT ATACCGAACA CGCAAGCTGC AGTGGACGAA
TATGGCTCAC CTTGGTCTAA ATTTGCCGGT AATCCATTGC TGAAACCGTT GGAAGCGAAT
AATTTTGACT TGTCATTTGA AAACTATTTT GAAGATGAAG GCTATGTTTC AGCCGCGGTC
TTCTATAAAG ATTTAGTCAA TTGGACAAGA GACGGCGACC TAGACATCAA TTTCAGAAAT
GATGTAACCA ATGACGGTGC CGATTACTTC ATCCCAGGGT TCCACGACCG CGTCGCTGTT
GAAGATGGTC TCTACGGGCC AGCAAACACG CCTTATTCAG CAGGAGATGT CATTACACCC
CCTGACTTTG GCACCTTTTC CTACTTTGAA GATGGCTTAA CGGGTGATGT TAAAGGGCTA
GAGCTAACAG CGAACGTGCC ATTAAATATG CTTGCTGACG CACTTGAAGG CTTTGGTATT
GCTGCTTCAG CTACGTTAAT TGATGCGGAG CTAGAGGACG GTACTGCCAT TCCAGGGCAA
TCGGATCGCA CTTATTCATT GACCGCTTAT TACGCAATGG GTGGCTTTGA GATTCGCCTT
GCTGGCACCG ACCGTTCTGA ATTCAGCACA TATCAACGTG GTGGCTCGAA CAAGGTTGAA
ACGGCAACAC GTAACGGCGT TACCTTGTTA GATGCACAAA TTAGTTACGA CTTTGAAGAT
TCAGACATTG ATTATTTGCA AGGTTTACGC GTTTCGTTAC AAGGAACGAA TTTGACCGAC
GTCGATGAGG AGACGCTGGA CAGCGATGGT ATCGTCACAA CTCGTCGTCA ATTTGGCCCT
TCATATATGA TGAACTTTAA TTATTCGTTT TACTAA
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| Protein sequence | MKNFKPNLIK AALITSGFAF GITPTAFAQE AAADAPGNDT EVIQVTGIRG SLIRAQAVKM
ENTSIVEAIS AEDIGKLPDS SIAESLARLP GMSGERVGGR TSGISVRGFK EDFTGTSLNG
RELIGIGDNR GVEYDLYPSE IMTGATIYKT AEAGLMVQGI GGTVDLQTVR PLQAQETLTI
NGNYELSGRD SDNPEFDNTG HRLSLSFVEK FADDTIGLAV ALASTESPNN QRKYGVWGYN
TNDEGQVTPS GLDSQAISTV LERDTISAVL QFQPTENLDI VIDALDISYS DSGVIRGFIE
PFSAGSISGT GTETTGTQVG VNPVLRTDPS QKDGDLQVFG LNVQYHLNDS WSVEVDVANS
ESTKRDLRGE SYAGLARSGA LDSSGLGTRD FVMSQDGITF TDSSGLDAFS DPSALQLTGP
QEWGGGLANL ADQFTSTELT ANGAPYSYLN AQDGFLNYAD FSEELTTYKF EVVGLLDGDI
FTQVTAGVNY SDRYKDKENK GFFATSSSYP ASTAIPQAYL YNGLADLTWA GMGYVVAYDG
FAPYNDGEYT LNDAGLLEPD RLGDTYVVEE EVTTLYAKVD FNTELGDFPV MGNIGVQYVQ
TDQSSSGFTG VVGSNFAVCD ANNDQQIDDD CRTSVSSDYS HVLPSLNVSV EVADNKFVRF
AANKTISRAR IDQMKASGFV KFDQNIDLLS IPNTQAAVDE YGSPWSKFAG NPLLKPLEAN
NFDLSFENYF EDEGYVSAAV FYKDLVNWTR DGDLDINFRN DVTNDGADYF IPGFHDRVAV
EDGLYGPANT PYSAGDVITP PDFGTFSYFE DGLTGDVKGL ELTANVPLNM LADALEGFGI
AASATLIDAE LEDGTAIPGQ SDRTYSLTAY YAMGGFEIRL AGTDRSEFST YQRGGSNKVE
TATRNGVTLL DAQISYDFED SDIDYLQGLR VSLQGTNLTD VDEETLDSDG IVTTRRQFGP
SYMMNFNYSF Y
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