| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1936 |
|---|
| Symbol | |
|---|
| ID | 4172783 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 2343674 |
|---|
| End bp | 2344897 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638054944 |
|---|
| Product | UBA/THIF-type NAD/FAD binding fold |
|---|
| Protein accession | YP_661508 |
|---|
| Protein GI | 109898253 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0476] Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2
[COG0607] Rhodanese-related sulfurtransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTTGT TTAGCGCGGG TGAGTGGCAG CAATACCAAC GCCATATACA ATTAGATGCG
GTGGGGGTTG ATGGGCAATT TCGCCTTAAA AATGCCAAAG TGCTGGTTGT TGGTGCTGGC
GGACTAGGGT GCCCCGTGGC GATGTACTTA GGTGCTGCAG GGGTCGGGAA TATCACCATC
ATTGACGGTG ACAGCATTTC TCAAACGAAT TTGCATCGCC AAGTTTTGTT TGCCTACACA
GACGTGGGTA AACCTAAAGC GCATGTTGCT GCAATCCGTA TTCGTGAGAA TAACCCTTTT
ATCACTGTGG CAGCGCTGGA TGAGCTGCTT AGCGAGTCGA ATATTGATAT CTTGGTAGCG
CAAGCAGATA TTGTGCTTGA TTGTACCGAC AACTTTGCGA CACGCTTACA GATCAACGAT
ACCTGCCGAG CGCATGATAA ACCTTGGGTT TATGCCAGTG TACTTGGGCT AGAAGGGCAA
GTAGCCTTGT TCACACCTAG CTGCGCTTGC TTCAGGTGTA TCTTTCCCGA TATCCCGGCT
GACGTCGCGG ATTGCAATTC AGCGGGTGTA TTGGGTAGCG TGGTCGGTGC AGTGGGTCTG
CTGCAAGCCA ATACCTGCTT GGGCTATCTT TTAGATTTAC AAGATGAAAG CCAGGGCAAG
TTACATTTCT TTTCAGGTAT CAGTAATCAG GTTCGCAGTA TTGCATTGCA GCAGAATAAG
CTGTGTACTT GCGCGAGTCC GTCACAGGTA CTACGTTGCC AACCTCTTAA AACTGCTGAC
CCGATTGAAT CTAAAGAGCT TGGGCAAGAA CCTGGGCTAC ACATCACTGA TGACATTCAG
TCGCAAATTC GGTCGCAAAT TGAACTGAGC CCCGAGCAAT TTGTTAAACA GCTCGGGCGT
TTAGAGGGCG CTCCTGAAAG TTGCCTTAAC AGTGCCCGTA AAAGTAAAGT GATAGACATC
GGTTTAATTG ATGTGCGAAG CGCAGACGAG CATCGAGGCT TTAATATTGG TGGCCAATGC
CTGCCCTTGA GTGATGACTT TGCTGATCGG GTTGGCACAA AACTCTCACA TAAAACCCAG
CCTATTTTAC TCTATTGCCA GTCAGGCAAA CGTAGCTACA AAGCGGCCTT ACGTCTTCGA
GCGAAGGGGT ATGGGCGGGT GTATAGCTTA AAGGGCGGTT TAGGCGAGTT ACTTAGTCAC
TCTCAATTCG TGAAATGGTT TTAA
|
|---|
| Protein sequence | MSLFSAGEWQ QYQRHIQLDA VGVDGQFRLK NAKVLVVGAG GLGCPVAMYL GAAGVGNITI
IDGDSISQTN LHRQVLFAYT DVGKPKAHVA AIRIRENNPF ITVAALDELL SESNIDILVA
QADIVLDCTD NFATRLQIND TCRAHDKPWV YASVLGLEGQ VALFTPSCAC FRCIFPDIPA
DVADCNSAGV LGSVVGAVGL LQANTCLGYL LDLQDESQGK LHFFSGISNQ VRSIALQQNK
LCTCASPSQV LRCQPLKTAD PIESKELGQE PGLHITDDIQ SQIRSQIELS PEQFVKQLGR
LEGAPESCLN SARKSKVIDI GLIDVRSADE HRGFNIGGQC LPLSDDFADR VGTKLSHKTQ
PILLYCQSGK RSYKAALRLR AKGYGRVYSL KGGLGELLSH SQFVKWF
|
|---|
| |