| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1913 |
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| Symbol | |
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| ID | 4172759 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2316179 |
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| End bp | 2317828 |
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| Gene Length | 1650 bp |
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| Protein Length | 549 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638054921 |
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| Product | AMP-dependent synthetase and ligase |
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| Protein accession | YP_661485 |
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| Protein GI | 109898230 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000707868 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAGCTC TAATGATGAA CTCACAGTTG ATGATTTCAA ACATTTTAAA ACACGCTGAG
AGGAACTATC CAAAGCGTGA AATCGTCTCT GTTACCTCTG ACAATCCGCG CCACCGTTAT
ACCTACAAAG ATTTAGCGAC GCGTACCCGT AAGTTAGCCA ACGCGCTTGC GTCATTGGGT
GCTAAGTTTG GAGATCGCAT CGGCACGCTA GCATGGAACG ACTACCGCCA CTTGGAGCTT
TATTACGCCG TGTCAGGCAG TGGTATGGTG TGCCACACCA TCAACCCTAA ATTGTTTCCA
GAGCAGGTTA ACTACATCAT TAATCACGCA CAAGACAGAT TCATTTTTGT TGACGTGTTG
GTCATGCCAT TAGTCGAGGC CCTTGCCCCT CATCTGCCCA AAGTAGAAGC GTTTATCGTG
TTGACCAGCA AAGCCAATAT GCCTGATACC ACGCTTGAAA ATGTGTTTTG CTATGAAGAA
CTCATTGCTG ACCAGTCTAG TGATTTTACA TGGCCTGAGT TTGACGAAAA CACCGCCAGC
GGGATGTGTT ACACATCAGG CACCACAGGT AACCCTAAAG GCGTGGTGTA CAGCCATCGT
TCAACATTAC TGCACGCTTA TGCTGGGGCG CTACCTGATG TAACTAATGC ATCAGGGCGA
GAAACCGTGT TACCAGTAGT CCCTATGTTT CACGTTAATG CATGGGGTTT ACCCTACGCT
ACCATTATGA CTGGTGCTAA ATTGGTGATG CCTGGTCCTA AAATGGGTGA TGGCGAGACA
CTCCACGACC TGATTGAAAC TGAGAAAGTC ACGTTTAGTT CTGGTGTACC CACTATATGG
TTGGCCCTAC TGACCTATTT AGATAAAAGT GGTAAAAAAA TACCTTCTCT TAGCCGAGTA
ACGGTAGGCG GCGCGGCTTG TCCTCGCGCC ATCATTGAGC GTTTCAAAGA CAACCATGAC
ACTATGGTGT ATCAGGGTTG GGGTATGACA GAGACAAGCC CTTTGGGAAC ATTCTTTGGT
TTACAACCCG GTATGGAAGA CTACACCGAT GAGCAAATCA CTGACTTACA AACCCTACAG
GGCCGCGGTG TATTTGGTAT CGAAATGCGT ATCGTCGATG AAGACAACAA CGAATTACCT
TGGGATGGTG TCGCGTTTGG CGCCTTAAAA GTTCGAGGCC CATGGGTGAT AAGTGGCTAT
TACGGCATGT CGCAAACACC GGGCGAAGAA GGCTGCCCGG TAGATGATAA AGGCTGGTTT
GATACCGGTG ACGTAGCAAC GATTAATGCC GATGGGTATA TGCAAATTAC CGATCGCACC
AAAGACGTGA TTAAATCTGG CGGCGAATGG GTAAGCTCTA TCGATATTGA AAATGCAGCC
GTTGGCCATC CCGCTATCGC AGAAGCTGCG GCCATTGGTC GTTATCATCC TAAGTGGACA
GAACGCCCGT TATTGATTGC TGTACGTAAC CCAGATTCAC AGGCCACAAG TGCTGAAATA
TTGAGTTTCC TAACCGACAA ATTGCATAAA TGGTCTTTGC CTGACGATGT GGTATTTGTA
GATGAACTGC CCCACACTGC CACAGGTAAA TTGAACAAGC TGGCACTGCG TAAATCCTTC
GAAGATTATG AGTTTCCTGA AGCGGGTTAA
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| Protein sequence | MQALMMNSQL MISNILKHAE RNYPKREIVS VTSDNPRHRY TYKDLATRTR KLANALASLG
AKFGDRIGTL AWNDYRHLEL YYAVSGSGMV CHTINPKLFP EQVNYIINHA QDRFIFVDVL
VMPLVEALAP HLPKVEAFIV LTSKANMPDT TLENVFCYEE LIADQSSDFT WPEFDENTAS
GMCYTSGTTG NPKGVVYSHR STLLHAYAGA LPDVTNASGR ETVLPVVPMF HVNAWGLPYA
TIMTGAKLVM PGPKMGDGET LHDLIETEKV TFSSGVPTIW LALLTYLDKS GKKIPSLSRV
TVGGAACPRA IIERFKDNHD TMVYQGWGMT ETSPLGTFFG LQPGMEDYTD EQITDLQTLQ
GRGVFGIEMR IVDEDNNELP WDGVAFGALK VRGPWVISGY YGMSQTPGEE GCPVDDKGWF
DTGDVATINA DGYMQITDRT KDVIKSGGEW VSSIDIENAA VGHPAIAEAA AIGRYHPKWT
ERPLLIAVRN PDSQATSAEI LSFLTDKLHK WSLPDDVVFV DELPHTATGK LNKLALRKSF
EDYEFPEAG
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