Gene Patl_1899 details

Gene Information

• Locus tag: Patl_1899
• Symbol: dcd
• ID: 4172744
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: +
• Start bp: 2297011
• End bp: 2297610
• Gene Length: 600 bp
• Protein Length: 199 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 638054908
• Product: deoxycytidine triphosphate deaminase
• Protein accession: YP_661473
• Protein GI: 109898218
• COG category: [F] Nucleotide transport and metabolism
• COG ID: [COG0717] Deoxycytidine deaminase
• TIGRFAM ID: [TIGR02274] deoxycytidine triphosphate deaminase

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.234563
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGTTTGT GCGACAAAGA CATTCTGACC CATCTTCAAG AAGGCAAGAT ATCGATTACC 
CCTGAGCCTG ATTATGCTGA GATCAGTGGC GTAACCGTCG ACATTCGATT AGGCAACAAA 
TTTCGTGTGT TCACTGAGCA CCAAGCGCCA TACATTGATT TGAGCGGCCC TAAGGCGCAG 
GTTCAAGAAG CACTAAACAC TGTGATGAGT GACGAAATCA GCGTTGGGCA GGACAAGTCA 
TTCTATTTAC ACCCAGGTGA GTTAGCGCTC GCAGTGACCC TTGAGTCAGT GACTTTGCCC 
GGCAACATTG TTGGTTGGTT AGATGGTCGC TCGTCACTGG CGCGGTTAGG GCTGATGGTG 
CATGTTACTG CGCATCGCAT TGATCCCGGG TGGTCAGGCA ACATAGTGCT AGAGTTTTTC 
AACAGCGGTA AATTGCCACT TGCGTTAAAG CCAGGCATGA AAATAGGTGC GCTGAGCTTT 
GAAGTGATGT CAGATTTTGC AGAAAAGCCT TATAACGCGC GTGTTGATGC CAAATACAAA 
AACCAAGAAG GCGCCATTGC CAGCCGCATT AGCGGCGATG ACAAAACAAG CACTCAGTAA 

 

Protein sequence

MRLCDKDILT HLQEGKISIT PEPDYAEISG VTVDIRLGNK FRVFTEHQAP YIDLSGPKAQ 
VQEALNTVMS DEISVGQDKS FYLHPGELAL AVTLESVTLP GNIVGWLDGR SSLARLGLMV 
HVTAHRIDPG WSGNIVLEFF NSGKLPLALK PGMKIGALSF EVMSDFAEKP YNARVDAKYK 
NQEGAIASRI SGDDKTSTQ