Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1895 |
Symbol | |
ID | 4172740 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 2291918 |
End bp | 2292691 |
Gene Length | 774 bp |
Protein Length | 257 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638054904 |
Product | hydroxyacylglutathione hydrolase |
Protein accession | YP_661469 |
Protein GI | 109898214 |
COG category | [R] General function prediction only |
COG ID | [COG0491] Zn-dependent hydrolases, including glyoxylases |
TIGRFAM ID | [TIGR03413] hydroxyacylglutathione hydrolase |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00137094 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCATCCC TGAAAATAAG ACCAATTAAA GCATTCGAGG ATAATTATAT TTGGTGCCTA ATCAACGGTG AAACCTGCAC AGTGGTTGAC CCAGGTGACG CTAAACCCGT CATTAAATTC TGCAGCCGCA ACAATTTAAC GTTAACAGAC ATACTGATCA CCCATCATCA TAGCGACCAC ACAGGTGGTG TAAATGACTT GCTACAAGCC TTCGAAAACG TCAACGTTTA TGGCCCACAA AACCCACAAA TCCAATCGAT TACTCAGCGC TTACAGGCTG GCGACACCGT TCAACTACCA TCACTAGATG TTGAATTTAA GGTACTAGAA GTGCCCGGCC ATACGCTTGA TCATATTGCG TATGTAGGTT CATGCGGATT ATTCTGTGGT GATACGCTCT TTTCTGCTGG TTGTGGCAGA CTGTTCGAAG GAACGCCACA GCAGATGTAT CAATCTTTAG GGCAACTAAC GGCTTTGGCT GACGACACGA AAGTGTACTG TACACACGAA TATACCTTAG CCAATATTAA ATTTGCTCAA GCTGCTGAAC CAAATAATGA AGCACTATTG AACTATAAAG GTTGGGCAGA ATCTCAAAGG GTTGATTTAA AACCTACCTT GCCCTCAACA ATAGGCCAGC AAAAAGCGAT TAATCCGTTT TTGCGCGCGA GTAGCAAGGA AGTCATACAA CATGCTGAGC ATTACGCCGG TAGAACACTC GCAACACCTG AATCAGTGTT TACTGCGCTT CGTGCATGGA AAGACAATTT TTAA
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Protein sequence | MSSLKIRPIK AFEDNYIWCL INGETCTVVD PGDAKPVIKF CSRNNLTLTD ILITHHHSDH TGGVNDLLQA FENVNVYGPQ NPQIQSITQR LQAGDTVQLP SLDVEFKVLE VPGHTLDHIA YVGSCGLFCG DTLFSAGCGR LFEGTPQQMY QSLGQLTALA DDTKVYCTHE YTLANIKFAQ AAEPNNEALL NYKGWAESQR VDLKPTLPST IGQQKAINPF LRASSKEVIQ HAEHYAGRTL ATPESVFTAL RAWKDNF
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