| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1875 |
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| Symbol | |
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| ID | 4173060 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2270838 |
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| End bp | 2271473 |
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| Gene Length | 636 bp |
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| Protein Length | 211 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638054884 |
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| Product | NAD-dependent epimerase/dehydratase |
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| Protein accession | YP_661449 |
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| Protein GI | 109898194 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0702] Predicted nucleoside-diphosphate-sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.146647 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGCAAGA CGTTAATAAT AGGTGCAAGC GGACAGATCG GCAAAATGAC CACACAGAAG
CTACTTGACG ATGGCACGAC GGTTGTTGGG CTAGTAAGAG ACAAGTCTAA ATTAAGCGAT
ATCAAGAGCG AGAACTTAGA CGTAGTGGAA GGTGATTTAG AACAAGATTT TAGTCATGCA
TTTAAAGGTT GCGATAGAGT CATATTCGCA GCGGGTTCTG GCGGTAGTAC CGGCGCAGAT
AAAACCATGC TTATCGATTT ATGGTCTGCG TGCAAGGCGG TAGATTATGC AAAAGCAGCA
AATGTGTCTC AATTCGTTAT GATCAGCTCT ATCGGCGCCG ATGACCCAGC GCAAGGCTCA
GATGAGATGA AGCCCTATTT AGTCGCTAAG CACATGGCCG ACGAGCATTT AATAAATAGC
GGTCTCAATT ACACTGTTTT ACGTCCGGGT AGTTTAAAAG ATGAAGATGC CAAAGGCGGT
TTCCAAACCG CTAAACCCGA CAGTAAAGAA AAGATGATCA TCACCCGAGA AGACGTCGCC
GATGCGTTGG TATTCGTGCT AGGCAACCAA AATGTAAACA ACAGCACGTA CGAGTTGTTT
AATGGTAACC AATCCCTTGA GCAAGCTTTC GCTTAA
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| Protein sequence | MSKTLIIGAS GQIGKMTTQK LLDDGTTVVG LVRDKSKLSD IKSENLDVVE GDLEQDFSHA
FKGCDRVIFA AGSGGSTGAD KTMLIDLWSA CKAVDYAKAA NVSQFVMISS IGADDPAQGS
DEMKPYLVAK HMADEHLINS GLNYTVLRPG SLKDEDAKGG FQTAKPDSKE KMIITREDVA
DALVFVLGNQ NVNNSTYELF NGNQSLEQAF A
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