| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1871 |
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| Symbol | |
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| ID | 4173056 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2262951 |
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| End bp | 2265521 |
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| Gene Length | 2571 bp |
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| Protein Length | 856 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638054880 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_661445 |
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| Protein GI | 109898190 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGGTC AAGACGTGCA GCAGGAGTTG GCCCAGTTAA GGGCTGAAAA CAAGAAGCTT
AAAAAAATTA ACGATGCACT CATATCTAGA GTTGAACAAG GCGGCGGTAA TCAATATGCG
CCCTACGCGG CGTTCGAACA TTCTGTACAT TTAGCCGAAC AAGTCAGGGA AAAGACCCAA
ATTTTAAATG AAACCTTGGC CGAGGTTGAG CATAGTCATC GCGCACTAAA GCAAGCCAAT
GAAGATGCGA ATATATTTAA ACAGCGTTTT ATCGATGCCA TAGAGAGTAT CTCTGAAGCC
TTTGTACTGC TCGATAGTGA CGGCTTGATA CTGCTGCAAA ATTCTAACTT TGCCACGTTC
TGGGGTAAAA CAGGGTTGGC CATTCAAGAA GGTGCTAACT TCAACGATTT GAAAGATAGA
GCAAAATCCA GCGGTATGAT CAGGCGTGCA AGCCCAGGTG GCGAACAAAG CAGTCCTGTG
TATCAATTAG CCGATGGACG TTGGTTTCAA CTCAACGAGC GGCGCACAAG CGAAGGTGGT
TGGGTGATGT TGTACACTGA CATCACAGAA GTCAAGGTAG CTGAAACCGC CCGCTACGAA
CAAGGCATGA TCCAAAAGTC CATGTTGCTA CAAGGCCTAA TAGACAACTT ATCCCAAGGG
GTTGTCATGA TCAGTAGCGC CAACCAGATT GAGGTATGGA ATAACCGGTT TGTGCAAATG
AGTCAGCTCT CCCCTAATCA ATTGCGCTCC ATGCCTTACT TTCAGCATTT AACCAATTTA
ACCGAATTGG AACTTGGCGA ACGACCTCGA AATAAAGACG GTTACTATGT ACAAACCCTC
TCAAACGGCA CCGTATTAGA AATACGCGAC CACAGATTAC TCAACGGTAA ATTAATCAAA
ACCTATACGG ATATCACAGT TCGACATCGC TATGCGGAAT CTCTGGAGAA AAGCGAACGT
TGGCTACGAC TCATCACAGA TAACGTACCC GCCATGATCG CGTATATTGG CAGTGATTTG
AAATTTCAAT TTACCAACCA AGTCTATGTA GATTGGTACG GTTGGCCCCA AGGCAGTTTA
GATGGTGAAT CAATCAAAGA TAGTCGGGTA GATTCTGATT ACCGCCAGCT TCGCCCCTAT
ATTGAACGTG CTCTAAAAGG GGAGAGTGTC AGCTTTGAGA TAGCGGAAAA AAATCACGCT
GGTGAATCTC GGTATTTGTT AAAGTCCTAC GTACCTAATC GCAGTAGTGA CGGTAATGTA
CAAGGATTTT TTGTTTTAGT CAGAGACGTA ACAGAACGTA GACGCAACGC TGTCGCCTTG
CAAAAAGCCC ACGACCAGCT TGAAATTCGT GTGGCTGAGC GCACGTCCCA GCTCAAAAGC
CTCAATGATG AACTCATTAT TGAGGCAGAA GAGCGCAGGC TTGCACAGGT CAACCTCACC
ACGGCTAAAC GTGAAGCTGA GTTTGCCAAC ATTTCAAAAA CAAAGTTTCT TGCCGCAGTC
AGTCATGACT TACTGCAGCC GCTTAACGCA GCCCAACTTT TCACCAGCTC ATTAGGCGAA
ACGCTCGTTA ATGCGGAGTC CCTCCCGCTG GTCAACTCAT TAACCAATTC CTTAGATGAT
TTAGAAAATT TGATCAGTAC GCTAATAGAC ATCTCCAAGC TAGATGCCGG CGTAGTCAAA
GCAGATAAAG GAATATTTAA ACTCTCAGAG CTACTGGATA ACTTAGCCAA TGAATACCGG
CAAGCCACCG GCCAATACAA TATCGAATTG CGCTATGTGC CATCAAACAT CATGGTGTAT
AGCGACAGCG TATTACTTGC ACGCATTCTA CGTAATTTTA TGTCGAACGC GTTTCGATAT
GCCGCTCAAG GTAAGGTATT ACTAGGGTGT AAACGCAGGG GAGATCACGT GGCAATAGAA
ATATGGGATA CCGGCTCCGG CATTGCACAA GATCAACTCA CCGAAATTTT TAAAGAATTT
AAACGCTTAA AATCATCACA AAGCGCCTTT GGCAATGGCC TAGGCTTAGG GCTGGCCATA
GTCGATAAAA TTGCTCATGT GTTAGGCCAT AAAATCACCG TCAATTCTGA GTTGGGCAAA
GGTTCTGTGT TTTCCGTTAC CGTACCCATA TCTGCGAAGC AGGAGCTGCC AAAACACTTG
GCCAACGTAC AGACGTTCGT TAGCCCAACA GATTTTTCAC ATTGCCGGAT TTGGTTAGTC
GATAACGACA TCAGTGTTTG CGAAGGAATG TCGCATTTAC TCTCCGGCTG GGGCTGCCAT
ACGGTTACCG CGGTGAGCTT AGAGGCGTTA AAGGAAAAGG TGAATATTGC TCACGATGAG
GTGGATATTC TAATGGTCGA TTACCACTTA AACGATGGTG AACTGGGCGT GGATGTGGCA
CACCATATTA ATCAAACTCG GCGAAGCGCC CTCCCGACTA TTATGATCAC AGCCAACTAC
AGTCAGTCAC TCAAAAACGA AATCAAGAAC AGCAAAATAT TGTTGCTTAA TAAACCGGTA
AAACCCATGA AACTGAAAAC ATCAATGCTC TATTTGTTGC GTAAAGCTTA G
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| Protein sequence | MSGQDVQQEL AQLRAENKKL KKINDALISR VEQGGGNQYA PYAAFEHSVH LAEQVREKTQ
ILNETLAEVE HSHRALKQAN EDANIFKQRF IDAIESISEA FVLLDSDGLI LLQNSNFATF
WGKTGLAIQE GANFNDLKDR AKSSGMIRRA SPGGEQSSPV YQLADGRWFQ LNERRTSEGG
WVMLYTDITE VKVAETARYE QGMIQKSMLL QGLIDNLSQG VVMISSANQI EVWNNRFVQM
SQLSPNQLRS MPYFQHLTNL TELELGERPR NKDGYYVQTL SNGTVLEIRD HRLLNGKLIK
TYTDITVRHR YAESLEKSER WLRLITDNVP AMIAYIGSDL KFQFTNQVYV DWYGWPQGSL
DGESIKDSRV DSDYRQLRPY IERALKGESV SFEIAEKNHA GESRYLLKSY VPNRSSDGNV
QGFFVLVRDV TERRRNAVAL QKAHDQLEIR VAERTSQLKS LNDELIIEAE ERRLAQVNLT
TAKREAEFAN ISKTKFLAAV SHDLLQPLNA AQLFTSSLGE TLVNAESLPL VNSLTNSLDD
LENLISTLID ISKLDAGVVK ADKGIFKLSE LLDNLANEYR QATGQYNIEL RYVPSNIMVY
SDSVLLARIL RNFMSNAFRY AAQGKVLLGC KRRGDHVAIE IWDTGSGIAQ DQLTEIFKEF
KRLKSSQSAF GNGLGLGLAI VDKIAHVLGH KITVNSELGK GSVFSVTVPI SAKQELPKHL
ANVQTFVSPT DFSHCRIWLV DNDISVCEGM SHLLSGWGCH TVTAVSLEAL KEKVNIAHDE
VDILMVDYHL NDGELGVDVA HHINQTRRSA LPTIMITANY SQSLKNEIKN SKILLLNKPV
KPMKLKTSML YLLRKA
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