| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1861 |
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| Symbol | |
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| ID | 4173046 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2250751 |
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| End bp | 2251527 |
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| Gene Length | 777 bp |
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| Protein Length | 258 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638054870 |
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| Product | ABC-2 type transporter |
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| Protein accession | YP_661435 |
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| Protein GI | 109898180 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1682] ABC-type polysaccharide/polyol phosphate export systems, permease component |
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| TIGRFAM ID | [TIGR01247] daunorubicin resistance ABC transporter membrane protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAACCTTG CAACGTACTT ATACTGCATG AAGGGCATTG TTAAGCGAGA GGTATTGCGC
TTCTTACAAC AAAGGACCCG CTTATTGAGC GTATTGGTGC GACCATTGCT GTGGCTGGTT
GTGTTTGCGG CTGGGTTTCG ATCTGCGCTG GGGATCTCAA TAATGGAACC CTACAGTACC
TACATCACCT ATCAGCAATA TATTACGCCC GGGCTTGGCG GCATGATCAT CTTGTTTCAT
TGCATGCAAA GCTCGTTGTC TATGGTGTAT GACCGAGAGA TGGGCAGTAT GAAAGTCTTA
CTTATGAGCC CAATGCCTCG GCCCTTTTTG CTTTTTAGTA AACTCGTGGC CGGTGCTATT
TTGTCGACCT TTCAAGTGCT TATATTTTTG TTCATCACTC GATTAGTGGG AGTCGATATT
GAATTTACCG GATACCTATA TGCTGTACCT GCTATTTTCT TGATATCGTT TTTTCTCAGC
GCGCTGGGAT TAATGCTCGC GAATCTTATT ACTCAGCTAG AGAACTTTGC AGGCGTGATG
AACTTTGTCA TTTTTCCGAT GTTTTTCTTG TCCAGTGCAC TGTATCCCTT ATGGAAAATG
CAAGAAGCAA GCGCCGTGTT GTTTTGGATC TGCCAGTTTA ACCCCTTTAC GCACTGTGTC
GAGTTATTGC GATTTGCGCT GTACGGGCAA GTTAATGAAC TTGCTTTTAC CGTGGTTTTT
AGCAGCGCCT TGGTGACTTG CGTTATAGCC CTAGTGACGT TTCGAGGTCG TGGATAA
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| Protein sequence | MNLATYLYCM KGIVKREVLR FLQQRTRLLS VLVRPLLWLV VFAAGFRSAL GISIMEPYST
YITYQQYITP GLGGMIILFH CMQSSLSMVY DREMGSMKVL LMSPMPRPFL LFSKLVAGAI
LSTFQVLIFL FITRLVGVDI EFTGYLYAVP AIFLISFFLS ALGLMLANLI TQLENFAGVM
NFVIFPMFFL SSALYPLWKM QEASAVLFWI CQFNPFTHCV ELLRFALYGQ VNELAFTVVF
SSALVTCVIA LVTFRGRG
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