| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1859 |
|---|
| Symbol | |
|---|
| ID | 4173044 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 2248911 |
|---|
| End bp | 2249900 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638054868 |
|---|
| Product | YVTN beta-propeller repeat-containing protein |
|---|
| Protein accession | YP_661433 |
|---|
| Protein GI | 109898178 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3391] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR02276] 40-residue YVTN family beta-propeller repeat |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.981734 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGA ACGTTTTGAA TATATCGCTA ATGCTGGGGA TGTTGCTTGG CTGCAATGTA
ATCACTTTGG TACACGCCCA AGAACTCGCT TACGTTTCCA ATGAAAAGGA CAACACGATT
TCGGTCATCA ATCTTGCACA GCACAAAGTG CTGCGAGAGT TTGACGTTGG TCAACGACCC
AGAGGGTTGG TACAGAGCCA TGATGGCACT ATTGCTTATC TGTGTGCCAG TGATTCTGAC
AGTATTCAGA TCATTGATTT AGTTAATGAA ACCGTTATAG GAGACTTACC GTCAGGAGAA
GACCCCGAAA CCATTGCGCT GCATCCCAAT GGCAAAATCA TTTATACCTC GAACGAAGAT
GATGCCCTGC TCACGGTAAT TGATATAGCA TCGAGACAAG TGATTACACA AATCGATGTG
GGTGTAGAGC CCGAGGGGCT AGCTGTCAGC CCCGACGGTA AACTGGTTGT GGTTACCTCG
GAAACAACCA ATATGGTGCA CTGGATAGAC ACAGAAACCT ACGAAAACAT CGATAATTCA
TTAGTCGGCG CACGCCCCAG ATCGGCAAAG TTTTCACAAG ATGGCAAGCA GCTCTGGGTT
AGCTCTGAAA TTGGTGGCAC CTTGAGCGTG TTTGACGTTA ATACCCGTCA GGTTATTCAT
GAATTTACTT TCGCTATTTC AGGGGTGCAT AGGGACAAAG TACAGCCAGT AGGGGTAGAG
TTAAGCGGTG ACGGAAAAAC AGCATTCGTT GCACTTGGCC CAGCCAATCA TGTGGCGGTC
ATTGATGTGC CTAGCATGAA TATCGAAGAA TATTTACTGG TAGGCAGACG GGTTTGGCAA
CTGGCGTTTA ATCAAGACCA AAGCAAGCTG TTAACCACCA ATGGTGTTAG CGGGGATGTG
TCGGTAATCA ATATTGCAAA GCGTAAGGTC ACGCATTCTA TCAAAGTAGG GCGTTACCCA
TGGGGCGTAG TTGTGCGTGG TGCGCAATGA
|
|---|
| Protein sequence | MKKNVLNISL MLGMLLGCNV ITLVHAQELA YVSNEKDNTI SVINLAQHKV LREFDVGQRP
RGLVQSHDGT IAYLCASDSD SIQIIDLVNE TVIGDLPSGE DPETIALHPN GKIIYTSNED
DALLTVIDIA SRQVITQIDV GVEPEGLAVS PDGKLVVVTS ETTNMVHWID TETYENIDNS
LVGARPRSAK FSQDGKQLWV SSEIGGTLSV FDVNTRQVIH EFTFAISGVH RDKVQPVGVE
LSGDGKTAFV ALGPANHVAV IDVPSMNIEE YLLVGRRVWQ LAFNQDQSKL LTTNGVSGDV
SVINIAKRKV THSIKVGRYP WGVVVRGAQ
|
|---|
| |