| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1855 |
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| Symbol | |
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| ID | 4173040 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2244095 |
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| End bp | 2245858 |
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| Gene Length | 1764 bp |
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| Protein Length | 587 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638054864 |
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| Product | Pyrrolo-quinoline quinone |
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| Protein accession | YP_661429 |
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| Protein GI | 109898174 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4993] Glucose dehydrogenase |
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| TIGRFAM ID | [TIGR03075] PQQ-dependent dehydrogenase, methanol/ethanol family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.668201 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAATA AAGGTATGAA AGCAGTATTG TCATTATCAG TGCTCATATC CATTGCACTG
TCCCCTGCGG TATCCGCAAA CGTTACAGAC AAAGATATTT TAAATGACCA AGCGACCACA
GATGATGTGG TGTCGTATGG CATGGGTCTT AAAGGTCAAC GCTACAGCCC CCTGTCAAAA
ATTAACGGCG ACACGGTGCA AGAAATACGT CCCGTTTGGG CATTTTCATT AGGTGGCGAA
AAGCAGCGAG GGCAAGAGTC ACAACCTTTA ATTAAAGATG GCGTTATGTA CGTCACGGGT
TCGTATTCTC GGGTTTATGC CATTGACGCC AACACGGGTG ACGAACTTTG GCAATATGAT
GCCCGCTTGC CTGACGGTAT TATGCCCTGT TGCGATGTGA TCAATCGCGG TGTCGCCCTG
TATGGTGAAC TCGTTATTTT CGGTACGTTA GACGCCAAAT TAGTCGCTTT GAATAAAGAC
ACAGGTAAAG TGGTTTGGAA GAAAAAAGTC GAAGATTATA AAGCCGGTTA CTCTATCACC
GCAGCTCCCA TTATCGTTAA AGGCAAGATC ATTACTGGTG TAGCCGGCGG TGAATTTGGC
GTAGTCGGTA AAGTGCGTGC TTACGATGCA GTCAATGGCC AACTCGTGTG GGAGCGCCCT
ACGGTTGAAG GCCATATGGG TTACATATGG AAAGATGGAA AGAAAACCGA GAACGGCATA
TCGGGTGGAA AGCCCGGCCA AACGTGGCCT GGCGATTTAT GGAAATCCGG TGGCGCTGCG
CCTTGGTTAG GCGGCACTTA TGATCCTGAT GTAGATTTAC TCTTCTTCGG CACAGGTAAC
CCTGCCCCGT GGAACTCTCA CCTTCGCCCG GGTGACAATT TATTTTCTTC GTCTCGTTTA
GCCATTGACC CAGACACAGG TAAAATAGTG TGGCACTTTC AATCGACTCC TCACGATGGT
TGGGATTTTG ATGGCGTAAA TGAACTGATT TCTTTCGATT ACAAAGACAA TGGCAAAACC
ATCAAAGCGG CAGGCTCTGC GGATAGAAAC GGCTTCTTCT ATGTATTGAA TCGTGAGAAC
GGTGATTACA TTCGAGGCTT CCCGTTTGCT GATAAAATCA CATGGGCTTC CGGATTAGAC
AAAAATGGGC GCCCTATCTT CGTGGATAGC AACCGCCCTG GCGATCCATC GGAGTCAAAA
GACGGCACGC AAGGCACATC CGTGGTGTCT GCACCTGCTT TCTTGGGTGC TAAAAACTGG
ATGCCTATGG CCTACAGCAA GGACACCGAA TTGTTTTATG TACCATCCAA CGAGTGGGAA
ATGGACATAT GGAATGAACC TACCGCCTAT AAAAAGGGTG CTGCTTACCT AGGTGCTGGT
TTTACTATTA AACCCATCAA CGAGGGATAT ATAGGCGTAT TAAAAGCAAT CGACCCTAAA
ACAGGCAAAG AAGTGTGGCG CTACCAAAAC TACGCGCCAT TATGGGGAGG CGTTTTAGCC
ACCGCAGGTA ACTTAGTGTT TATGGGTAAC CCTGAAGGTT ATTTACTCGC GTTTGATGCT
AAAACGGGAG AAATAAAATA CAAGTTCAAT ACCGGCTCAG GCATAGTTGG CTCACCCGTT
ACCTGGGAAA TGGACGGAGA ACAGTACATT TCAGTATTAT CAGGCTGGGG GGGCGCCGTT
CCACTTTGGG GTGGTGATGT AGCACAGCGC GTTAAACACT TTAACCAAGG TGGCAGCGTC
TGGACTTTTA AACTTCCTAA ATAG
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| Protein sequence | MNNKGMKAVL SLSVLISIAL SPAVSANVTD KDILNDQATT DDVVSYGMGL KGQRYSPLSK
INGDTVQEIR PVWAFSLGGE KQRGQESQPL IKDGVMYVTG SYSRVYAIDA NTGDELWQYD
ARLPDGIMPC CDVINRGVAL YGELVIFGTL DAKLVALNKD TGKVVWKKKV EDYKAGYSIT
AAPIIVKGKI ITGVAGGEFG VVGKVRAYDA VNGQLVWERP TVEGHMGYIW KDGKKTENGI
SGGKPGQTWP GDLWKSGGAA PWLGGTYDPD VDLLFFGTGN PAPWNSHLRP GDNLFSSSRL
AIDPDTGKIV WHFQSTPHDG WDFDGVNELI SFDYKDNGKT IKAAGSADRN GFFYVLNREN
GDYIRGFPFA DKITWASGLD KNGRPIFVDS NRPGDPSESK DGTQGTSVVS APAFLGAKNW
MPMAYSKDTE LFYVPSNEWE MDIWNEPTAY KKGAAYLGAG FTIKPINEGY IGVLKAIDPK
TGKEVWRYQN YAPLWGGVLA TAGNLVFMGN PEGYLLAFDA KTGEIKYKFN TGSGIVGSPV
TWEMDGEQYI SVLSGWGGAV PLWGGDVAQR VKHFNQGGSV WTFKLPK
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