| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1843 |
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| Symbol | |
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| ID | 4173028 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2232104 |
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| End bp | 2232943 |
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| Gene Length | 840 bp |
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| Protein Length | 279 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 638054852 |
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| Product | integron integrase |
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| Protein accession | YP_661417 |
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| Protein GI | 109898162 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | [TIGR02249] integron integrase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTACCAAT TACGTTATTC AAAGCGCACT ATTGAAGCTT ATCTTAAGTG GATCAGTAGC
TATATTCATT TTCATCAGAA AAAACACCCT AATTTAATGC ATGATAAAGA GGTAGAAGCC
TTCCTTTCAC ATTTAGTTTT AGAGTTAGAT GTGGCTGCAT CAACCCAAAA ATCAGCATTA
AATGCCTTGG TATTTCTATA TCGCGATATA ATTCGTCAAC CGTTAAATTT TAAACTTAAT
TTTATTAAAA GTACTCGCCA GCAAAAACTG CCAATCGTTC TCACTACTGA TGAAGTGAGG
AATTTACTTG CAGTTGTAAG TGCTCAACAG AAACTTGCGG TATCAATTTT ATATGCAAAT
GGCTTGCGTT TAATGGAATG TGTGAGATTG AGAGTCCAAG ATATAGATTT TGATTTCAAA
TCCGTACGGG TTTGGAATGG TGAAGGTGGT AAACATCGAA TTGTTACATT AGCCGATGAG
CTTATACCTA GTTTGCAACA ACAGATCACT GTCGTAAGAC AATATCTGGA TGCAGACTTG
TTAAACCCAG AATACGATGG CGTTTATCTA CCTCATCGTC TAAGGCTTAA GTTTAAGAAC
GCCAATCGCT CGTTACCATG GCAATATGTG TTTGCTTCGC GTCAACTATC GACAGATCCT
GAAGACCAAT CATTAAGGCG TCATCATATT GATGGGTCTA CGGTGCAAAA AGTAATACGA
CATGCCGCTA AAAAAGCCAA TATCCCTAAA ATCGTTACCC CGCACACGCT TCGCCACTCA
TTTAAAAAAT GCGTCCTTGC ATTTTTCCCT ACGGGCCATC CTTCGGATGT TCAAATTTAA
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| Protein sequence | MYQLRYSKRT IEAYLKWISS YIHFHQKKHP NLMHDKEVEA FLSHLVLELD VAASTQKSAL
NALVFLYRDI IRQPLNFKLN FIKSTRQQKL PIVLTTDEVR NLLAVVSAQQ KLAVSILYAN
GLRLMECVRL RVQDIDFDFK SVRVWNGEGG KHRIVTLADE LIPSLQQQIT VVRQYLDADL
LNPEYDGVYL PHRLRLKFKN ANRSLPWQYV FASRQLSTDP EDQSLRRHHI DGSTVQKVIR
HAAKKANIPK IVTPHTLRHS FKKCVLAFFP TGHPSDVQI
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