| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1840 |
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| Symbol | |
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| ID | 4173025 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2225731 |
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| End bp | 2228373 |
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| Gene Length | 2643 bp |
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| Protein Length | 880 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638054849 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_661414 |
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| Protein GI | 109898159 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00015166 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGAGCCA CAACAAAACA CACCCTTCTA GCATCATCCA TCGCTATGAT TATCAGCACT
GGTCAATTAT GGGCCCAAGA AAGTCCGACT GACACAGGTG CCAATGAAGA TATCGAGCAA
ATTTCAGTGG TAGGCATACG TTCGAGTATT GCCAGCTCAG TGGCGCGCAA ACAAGAGTCC
GGTCAGGTAG CAGACGTTAT TTCAGCGGAA GATATTGGTA AGTTTCCGGA TTTAAATGTC
GCTGAATCGT TGCAACGTAT TCCAGGGATT CAAATATCGC GCTCTCGGGG TGAAGCATCC
GGTGTGTCTA TTCGTGGCTT AGACGAAGTC GCAACCTTAT TAAACGGGCG AAACTATTTT
GGCGGTGCCT CCGGTGTCAG TATCAACCGC TTTGCCAGCT TTGAAGATAT TCCCGCAGAA
TTGGTTGGCT CCGTGGTGGT ATATAAATCA GTTTCAGCTG ACATATTAGA GGGCGGCATT
GGGGGAGTGG TCGATATAGA GCGCACCGAT GCTTTAAGTT TAAGCGGCCC TACAATTGCC
GGTAGTGTGA AAGAGCACTA TGGTGATTTA TCCAAAGAAT GGTCACCACG CGGTTCTTTA
GTGGCTGGCA ATATCTGGGA TTACGGCAAC AATGGCGGTG AAATAGGGGT TATCTTTGGT
GTTTCTTACT TAGAGCGAGA ATACCGTGAA GACCTAGTGC GTAACTCTAG TGCCACGTCC
ATCGTGGGCG ATTTTGCAGG TGGCACTGCG CCTGATGGTG CCAAAACCAG TGCTTCTCTC
AACTCATCCC CAGCATGGGG GGATAGAGAG CGTACGGTTT ACTCTTTAGG CATTGATGTC
TCTCTGAACA GCGATACTAA ATTCTATTTC GACTCTGGTT ACACCGATTA TTCCACAACG
CAGTTGCGCC AAGAGTTCGT GTGGGGCTTT GATGGTGCAA ATACCGTTGA CGCTGATTTT
TCTAATATAG ATGAAAACAA CGTTTACCCT AGGTCGGTTA CGTTGAGCGA CATGAACTTT
GATGTTCTGA GCATGATTGA TGACAGGTAC ACCACGACAT ACGATTTAGC GCTGGGCTTT
GAAACAGTTG CTGGGCCGTG GAGTATCGAA GGGGAGGTGA GTTACGTTGA TACCGACAAC
GACACCAACT TCCACAATAC CCGTATTCGT GACAGTTGGG ACGCCTTGCC TGTTACGATA
AATAACAGCG GGATACCAAA TCAGCCGCCC TCGGTGGACT TTGGTACTTT TGACGTAACA
GATGAGGGTA ATTTCGATAT CGTTCAATGG CGTCATGAAA GCCGCCAGTT ACAAGCAGAT
GAATCTGCGG CCAAGCTGGA TATTGATTAC GCATTTGACG AAGGATTGGT ACGTTCCATC
GAAGCGGGTT TGCGCTTCGC CAGTTTAGGC ACCACCAAGA ATATTCAAAA CAACCATATA
TTTGATGCCT CGGGCGCGAC CTATGGCAGT GACGACCCGC TTAATTTAGT CGAGCCCAGT
GCGTGGGACG ATTTTATGGA CGAGTATGAC GGTGGCAATT TCCCCAATGA TTATGTTGGC
GTTAATCCTA ATTACTTGTT GTCTCGCAAC GATGAAATTC GTGAATTTTA TGGCTTCACA
GGGCAATCAG AAACTGAAAA CCCCAGAGAT TCATTCGAAT ATGAAGAAGA TGTGACCGCC
CTATATATAA AAGCCAACCT TGAAACCGAA GTGGGGGGCT ATTTCATAAG TGGCGATATC
GGCGGGCGTT ACGTGCAAAC CGATACGACA GCGGATTATT TTTTCGATAC CGGAAATGCG
GACGAAAGTG GAGCGCCTAT TTACCAAGGC ACAAAAAGTG AAAAGAATTA CAGTGAATTC
TTGCCCTCGT TCAATTTGAA AGTTGAATTG AACGATGAGC TGCTGCTTCG CTTAGCGGGT
TCGAAAACAT TTTCGCGCCC TCATTTTGGT GATTTGGCCC CGTCGTTAAA CCTCAACTTT
GAGCAAGGTC GCGGCACCGG CGGTAACCCA GATTTAGACC CATTCACCGC AACCAATTTA
GATTTAAGCC TTGAGTACTA CTTTGCCAGT GGTGGTATGG CGTCATCTGC TATTTTCTAC
AAAGACATTG ACGGCTTCTT ACAAACCTCT GAAAGCCAAG AAACCATTGG TGGCAATGAC
TTTGTTATCC TGCGTAAAAG CAATGGCGGT TCTGGCACAG TGCGTGGTTT AGAGCTTGCT
TACCAACAGT TCTTTGATTT TTTACCCGCA CCATTTGATG GTTTAGGCGT ACAGGCGAAT
TACACCTACG TGGACTCAGA TGTGCCCTCG CCGAATCCAT TACTGCCTAA TATTTCACTA
GAGGGCCTAT CAGACAACAG TTACAACTTG GTCGCCATTT ACGAAGATGA TTTAGTTTCA
GGCCGTTTGT CATATAACTA CCGTTCAGAC TTTTTAGTGA CCACAGAAGT CGCCCAAGAA
GGATTTGGCC AACTCGATTT ATCGCTGGCC TACAACGTTT CTGAGAGCTT CCGATTCACT
TTGGATGCTT TAAACCTGCT TAGACGCGAT CATTTCGAAT ATCGCGCAGG GGATAAGTAT
GACCCATATC ATTGGATCGC CACTGAAAGA CAAGTGTTGG TCGGTGTGTC GTATACTTTC
TGA
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| Protein sequence | MRATTKHTLL ASSIAMIIST GQLWAQESPT DTGANEDIEQ ISVVGIRSSI ASSVARKQES
GQVADVISAE DIGKFPDLNV AESLQRIPGI QISRSRGEAS GVSIRGLDEV ATLLNGRNYF
GGASGVSINR FASFEDIPAE LVGSVVVYKS VSADILEGGI GGVVDIERTD ALSLSGPTIA
GSVKEHYGDL SKEWSPRGSL VAGNIWDYGN NGGEIGVIFG VSYLEREYRE DLVRNSSATS
IVGDFAGGTA PDGAKTSASL NSSPAWGDRE RTVYSLGIDV SLNSDTKFYF DSGYTDYSTT
QLRQEFVWGF DGANTVDADF SNIDENNVYP RSVTLSDMNF DVLSMIDDRY TTTYDLALGF
ETVAGPWSIE GEVSYVDTDN DTNFHNTRIR DSWDALPVTI NNSGIPNQPP SVDFGTFDVT
DEGNFDIVQW RHESRQLQAD ESAAKLDIDY AFDEGLVRSI EAGLRFASLG TTKNIQNNHI
FDASGATYGS DDPLNLVEPS AWDDFMDEYD GGNFPNDYVG VNPNYLLSRN DEIREFYGFT
GQSETENPRD SFEYEEDVTA LYIKANLETE VGGYFISGDI GGRYVQTDTT ADYFFDTGNA
DESGAPIYQG TKSEKNYSEF LPSFNLKVEL NDELLLRLAG SKTFSRPHFG DLAPSLNLNF
EQGRGTGGNP DLDPFTATNL DLSLEYYFAS GGMASSAIFY KDIDGFLQTS ESQETIGGND
FVILRKSNGG SGTVRGLELA YQQFFDFLPA PFDGLGVQAN YTYVDSDVPS PNPLLPNISL
EGLSDNSYNL VAIYEDDLVS GRLSYNYRSD FLVTTEVAQE GFGQLDLSLA YNVSESFRFT
LDALNLLRRD HFEYRAGDKY DPYHWIATER QVLVGVSYTF
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