| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1826 |
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| Symbol | |
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| ID | 4173011 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2196716 |
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| End bp | 2199601 |
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| Gene Length | 2886 bp |
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| Protein Length | 961 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638054835 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_661400 |
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| Protein GI | 109898145 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000380617 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAATCG TTAAACACTT TCGTTTATTA CCTTTAGGCA TCGCTGTCTC TGCAGCACTG
ATTAGTGCCA ACACCTATGC GCAACAAACT GACGAAACAG AAGTCATTCA AGTTAGAGGA
ATAAGAAGTA GTCTGAGTGA AGCGATGGAC CTAAAGAAAT CGGCCCCTTC GATACAAGAC
AGTATAGTGG CCGAAGATAT TGGTAAGTTT CCAGATCAAA ATGTAGCCGA GTCTTTACAG
CGGATTTCTG GTGTGATGAT TTCGCGAAAT AATGGTGAGG GTTCAAAAAT TTCGGTTCGT
GGCATGGGTC CACAATTTAA TGCCGTGAAA ATTAATAATC GAACGATTGC CACGACAGAC
AGAGGCCGAG AGTTTGATTT TCAAGCGTTA CCTTCAGAAT TGATATCGGG CGCGGACGTG
ATTAAAGCAT CGCGCGCCAA CATAGCCGAA GGAAGCTTAG GGGCCTACGT AAATATATCG
ACGGCCCGAC CTTTAGATAG CACGGGCTTT AATGCTGCCA CATCAGCAAA TATTAGCTAC
AACGACTTGG CTGACGAGTA CGGTAATAGA GTGTCAGCCA TTATTAGCAA TACCTTTGCT
GATGATCAAT TTGGCATTTT GTTTGGATTT TCTCGTCAAA AAACCACCAA TAGAGTCGAT
GCTGCAGGCA CCACCCATTG GGGCTCATTT CAAGCGGACA ACCAAGCCTG GATCACAGGC
CCCACTAAAG ACATTAATGG CCAAGATATC ACCCAAGGCA CTATTTGGTA TCCTGGTAGA
GGCACCTTTA CTCTGGATAT TGAAGAGCGT GAGCGCACAA GTGCAAACGT CACCTTTCAA
TGGCAACCCG ACGAAGACAC CACACATACC TTCGATGCTC TATACACGGA CTTGAGCCGG
CAAGCTGGTA GCAACGGTAT TCAAGTGCCG CTGCAGGGTT CTGGTTGGAG TGACGTAGTC
GTATCTGAAA ATTACACCTT GCTTGAGGGC AAGCGAAATC AAAAACCAAT TGATGTGCTT
ATGCAAGAAC GTGGGCAAGA CTCCGACACC TTGGCACTTG GATTAAATAG TGAGTTCTAT
CGTAGCAGCT GGAAATTGGT GAGCGATTTG TCGTATTCAA AATCCACCGC AACACCCAAA
GCCAACACAC TTGTAGCGCA TGCCGTAAAT CCTAATTACG ACGATTCGTT AGATATCTTT
GACCCCAACT ACGTTGATGG ACAGATCAAA GGCCTAACCA TTAATGACTA CCTGAATGTT
GATAACTACG GCGATATTAT GTCCATCGAC ACGTCTGTTG ATTACGGTAA CCCAGCGGCC
ATACGCACGC ACTGGAATGA CATTCAACAC AAAGAGCTTG AAGATGAAAT TTTTGAAGCC
AAGTTCGATG CGAGTTATAC CCTAGATTCT GGGCCAATCA GATCAGTTGA TATGGGCGTG
GCCTATTCGG ATCGTGAAAA GTCCCAGCAA GTCTTTAAAA TCAATCATGG CTGCTATAAT
ACGGATTTAT GGGTGCAGCC CGAAATAACC ACACCTGAAG AACAATACCT GTTCGATAAC
ACTCTTTTAC CCTACAACAC ATGTGGCCAA CACATTGATT TAGAAGACAG CTTATTTCGT
ACAAATAACG TTAACTTCTT AGCAGATGAA AGCGGCACCT TCCCGCGTAA TTTTGTGCTA
GTAAATGATT TCAACGCTTA TAAAGAAGCC ATTGCAGATA TTCGTCAGGA GCCTAATTGG
ACTCAAGAAT ACTTAGCCCC CGCCGAGTCT GTTGCGAACA CAGAAGAAAC CTTTGCTCTA
TACAGCCAAC TCAATTTGGA GGGTGATGTA CGAGACATTT TGATCAGCGG CAACGTCGGT
TTACGCTATG TAAAAACCAA AACATCATCT GAGGGTCATC GCCGCTTTCG TGACTCAATC
AGTGATGTTT ACGAGCAAAA CGAAGGCGTC ATAGTAGAAA TTGTTTATAC GGATCCTGAA
GCGTTAACGG TTGAAAAAGA CTATTCGCAC TTTCTGCCAA GTGCCAATTT AAACGTTGAT
TTCGGTAATG GCGTTTTTAT AAAAGGTGCC GCCGCCAAAG TTATCACGCG CCCTGCCCTT
GAAGATACTG GCGTAAACAG CACCTACCCT TTGCGTATTC GCGCTGATCA GTACAATACG
AAAAGTGGTA ATCCGTATTT AGAACCCTAC GAAGCAACTC AGTATGACTT GTCGTTAGAG
TATTACGCCG ACAACGGCGA TGCCTACTCA GCAGGCCTGT TTTACAAAGA CATAGGCACG
TTCATATCGC AAAAGACAGT GCAAAAAGAT ACGGGTTACG TCGCCGTGAA TCAGGATTGG
GGGACCTTTT ATGAATACTC AGAAGAGCAA ACCAATCGTA GCGGCGGCAA AGTCAGCGGT
ATTGAAGTGG CAGCGTTGCA CTACTTTGAT TATTTACCCG GTTGGCTAAG TGGCTTCGGT
ATTCAAGCTA ACTACACCTA CACCGACAGC AAAGACGATG AAGCGGCGAA AGACGAGATA
ACACGTGAAA ACGTGTTATC TGCGGGCAGT GGTTTAGAAG GCTTTTCAAA GAATGCTTAC
AACGTTATCG GCTTTTATGA GCAGGAAGGC TTTCAAGCGC GCTTAGCATA TAACTGGCGT
GACAATTACC TGAAATACCG CTCAGGCCCA GTGATAGGAA GTAACGGTTT GCCTCAACAC
GTGCAAGACT ATGGTCAATT TGATTTCAGC ACCTCATACG ACATAAACGA AACCTTCACT
GTCAGCGCTG AAGCCATCAA CCTGACCAAT GAAAAAATAG TCGAATATGC CGATGTGCGA
GAACGAGTCA CTCAGATTCA ATACTCAGGA AGACGTTTTC AACTCGGTGT GAAAGCGACT
TTCTAA
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| Protein sequence | MTIVKHFRLL PLGIAVSAAL ISANTYAQQT DETEVIQVRG IRSSLSEAMD LKKSAPSIQD
SIVAEDIGKF PDQNVAESLQ RISGVMISRN NGEGSKISVR GMGPQFNAVK INNRTIATTD
RGREFDFQAL PSELISGADV IKASRANIAE GSLGAYVNIS TARPLDSTGF NAATSANISY
NDLADEYGNR VSAIISNTFA DDQFGILFGF SRQKTTNRVD AAGTTHWGSF QADNQAWITG
PTKDINGQDI TQGTIWYPGR GTFTLDIEER ERTSANVTFQ WQPDEDTTHT FDALYTDLSR
QAGSNGIQVP LQGSGWSDVV VSENYTLLEG KRNQKPIDVL MQERGQDSDT LALGLNSEFY
RSSWKLVSDL SYSKSTATPK ANTLVAHAVN PNYDDSLDIF DPNYVDGQIK GLTINDYLNV
DNYGDIMSID TSVDYGNPAA IRTHWNDIQH KELEDEIFEA KFDASYTLDS GPIRSVDMGV
AYSDREKSQQ VFKINHGCYN TDLWVQPEIT TPEEQYLFDN TLLPYNTCGQ HIDLEDSLFR
TNNVNFLADE SGTFPRNFVL VNDFNAYKEA IADIRQEPNW TQEYLAPAES VANTEETFAL
YSQLNLEGDV RDILISGNVG LRYVKTKTSS EGHRRFRDSI SDVYEQNEGV IVEIVYTDPE
ALTVEKDYSH FLPSANLNVD FGNGVFIKGA AAKVITRPAL EDTGVNSTYP LRIRADQYNT
KSGNPYLEPY EATQYDLSLE YYADNGDAYS AGLFYKDIGT FISQKTVQKD TGYVAVNQDW
GTFYEYSEEQ TNRSGGKVSG IEVAALHYFD YLPGWLSGFG IQANYTYTDS KDDEAAKDEI
TRENVLSAGS GLEGFSKNAY NVIGFYEQEG FQARLAYNWR DNYLKYRSGP VIGSNGLPQH
VQDYGQFDFS TSYDINETFT VSAEAINLTN EKIVEYADVR ERVTQIQYSG RRFQLGVKAT
F
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