| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1817 |
|---|
| Symbol | |
|---|
| ID | 4172065 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 2183924 |
|---|
| End bp | 2184463 |
|---|
| Gene Length | 540 bp |
|---|
| Protein Length | 179 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638054827 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_661392 |
|---|
| Protein GI | 109898137 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3803] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTACG AAGACATTAT TGAGTTTTGG TTTAATGAAC TTACGCCATC CCAGTGGTGG
CAAAAAAGTG CTGCTTTTGA TGCCGAACTA AAGGAACGAT TTTCCGACGA GCATCAGCAA
GCGATACAAT GCGAGCTGAA ACATTGGCGT AGCACAGCGC TAGGGCGCTT GGCGGAAATC
ATCGTGATAG ATCAGTTCTC GCGAAATATT TACCGCGATA CGCCTCGGGC ATTTATGTAT
GACCCGCTAG CACTTGCTTT AGCACAAGAA GCACTAGTCG TGAAAGCGGA TGATGAACTG
GGTGAGTCTC AGCGTAATTT TATGTACATG CCGTTTATGC ACAGTGAATC CTTAACGATT
CACCAGCAAG CACAGCCTTT GTTTGAAAAC AAAGCAAGTC AACATACCTA TAATTTTGAA
TTAAAGCACA TGGCGATTAT TCAGCGATTT GGTCGTTATC CCCATAGGAA CGATATTTTG
CAGCGCAATT CGACCGAAGA AGAGCGCAAG TTCTTAACCC AAGCCAATTC ACGTTTTTGA
|
|---|
| Protein sequence | MAYEDIIEFW FNELTPSQWW QKSAAFDAEL KERFSDEHQQ AIQCELKHWR STALGRLAEI
IVIDQFSRNI YRDTPRAFMY DPLALALAQE ALVVKADDEL GESQRNFMYM PFMHSESLTI
HQQAQPLFEN KASQHTYNFE LKHMAIIQRF GRYPHRNDIL QRNSTEEERK FLTQANSRF
|
|---|
| |