| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1810 |
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| Symbol | |
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| ID | 4172058 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2174484 |
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| End bp | 2177072 |
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| Gene Length | 2589 bp |
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| Protein Length | 862 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638054820 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_661385 |
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| Protein GI | 109898130 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.397284 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCATTT TACCTAATCG CTTAAAACGT ACCCCCGCCG CCTCATTTAT TGGTTTAGCA
CTTGCGCTAA ACGCAGGGCT CTCTATCGCC CAAGACGTCG CTCCTGATGA CAAAGGGCTC
GAGACCATTA CCGTCACTGC GCAAAAACGC GCGCAAAATC TGCAAGAAGT CCCCGTTTCT
GTTACCGCTT TCAACGGCGA AGCAATGGCA GAGGCGGTTA TCAAAGATAT GTATGACTTG
CAAACAAACG TACCCGGTCT AGGGGCCTTT CAAAGCCAAA GTGCGACAAA TTCTAGTTTC
TCCATTCGTG GTGTTGGCAC CTCTTCGCAA AACTTTGGTT TGGAGTCCTC GGTTGGCCTA
TACGTTGATG GAGTTTATCG CGCTCGTCAA AATTCCATGA TCAACAACTT AGTTGATGTC
GCTGCTGTAG AAGTACTGCG AGGCCCTCAA GGTACATTAT TTGGTAAAAA CACTCCTTCC
GGTGCGATTT TGTTATCCAC AGTAGCCCCT AGCCACGGCG GCGGAGATGG ATTTGTTGAA
GCCACGGTGG GTAATTACGG ACTAGTGAAT TTGTCGGGTG CTGTGTCTCT ATCCGCGATA
GAAGACGTTT TAGCCTTTCG CGTAACAGGG TTTTCAAGTG ATCGTGACGG TACCATAGAT
GATGTAAATT TTGGCGAAGA TGTACTCAAT GACAGAAATC GTTTTGGTGG TCGCTTACAA
GCACTGTATA CCCCAAGCGA AGATGTGTCT CTTCGTGTGA TTGCTGACTA TGCAGAAATA
GACGAAATTT GCTGTGGCGC CCCAGTGCAA CTAAGCAACT TTCAAGCAAA TGAAATTCCA
GGAAAGTTTG GCACCGATGC GGCGATAGAC CAATTAGGCG GAACACGCTT TGAAGGTGGA
GAGGCCTTTT TTGATAGAGA AGTAGCCGTT TCATTTTTAC CTGTAGCGAC CATGAAAGAC
CGCGGGCTTT CTGCTGAACT CGATTGGGAA TTAGACGAAA ATTACACTTT TGTATCAATC
TCGGCGATAC GCGCGTTTGA CTCCTACGAC AATATTGACA GTGATTTCAC GGACGCAGAT
TTATTTGGTA CTTTGAACGA CTCTGAGCAA AGCTCTTTTT CTCAGGAATT TCGCCTAGAT
TATACCAGCG AAGATTTGAA CTTTATTTTA GGCGCTTATT ATTTTACTCA AGACTTAGAT
CTAAACTATA GCCTTTACAC TGACAACATA TTCGAAGGCT TCGCGCTGAG CGTGTTGGGC
CAAACAGTTG ATGGGTTAAC CGGTGCTCCT GGCACGTTTG ACGCGTTATT AGGTGGTATT
GATGGCCTTG CCTCCGCAGG GTTAATTGCC CCAAGAGCGG CTGCAGCTCC AGCAGGTACA
GGCTTTGATC ACATGGCCGA GCAGGAACAT AAAAGCTATG CCATTTTTGG GCAATTTGAT
TACAAACTCA CTGATGAATT CACCCTAACC GCAGGATTAC GTTTCACCAA AGAGAAAAAA
GACTTACTCA CTGTTTTCAC TGAAGTCGGG CCAGGCATCA ATGGTTTGGC TGACAACACT
CCTGTGGATT TAGTATCGGC GTTAACCGTT GCCGGCGGTA TTGCCGCGGG GGCAATTGAT
TTGACCACGG CAGAAGGCCA AGCCACATTG GGCACATTCC AAGGTTTCAG TGAAGCAGGT
TGGGCATTTC CACTGTTAGG AGATACCACT CGCCCGCGCA GCAATATTGA AGAAAGTTTA
AGTGACGACC AAATCAGTGG TACGTTGAAA CTGAGCTACC AACCTAACGC CGACACGTTA
TTGTATGCCT CATACGGTAA CGGCTATAAA TCAGGCGGTA CTAATACCGA TCGGATCGCG
GCCAGCTTTA ACCCAATCTT TGACGCCGAA ACGTCTCAGT CCTTTGAAGT GGGGATCAAG
AAAGATTTCC GCGAGCAAAA TTTGCGGGTA AATGCCGCTG CCCATTACAC CACGGTTGAT
GACTTTCAAG CGAACACCTT TACAGGAAAT GGTTTCAACT TACAAAACGC CGGTGACTAT
GAAATATCAG GCATGGAGTT AGAAGCAACG TGGATCCCCA TGGACACCGT GGAAGTGAAC
TTCGGTTATG CGTTAGTAAA TGCTGAATAT AAAACCTTCG AAGCTGGCAA CTGCTGGACG
GCTTATTCAT GGCATACAGG TATTGACGAC CCAGGTCGTG TTAATCCAAC TGATGGATTT
TGTGACCGCT CGGGAGACCG CCCTGGAGGC GAGCCTGAAA ACTACGCGGT GTTAAGTGTC
AAGAAAGACT TTGAATTGAG TGATAGCATT TATGCCTATA TTCAAGGTGA ATACAGTTAC
ACCGGTGATG TGATACTAGA TGGCAGTAAC GATCCGTATG CGGTCCAAGA TTCCTACAAT
ATATTGAACT TACGTTTGTT CATGAACTTC ACTGAATACG ATATGGACGT GATTTTGTGG
GGCCGTAATA TATTGGATGA AGAGTACATT AACCGCACCA ACTTCAACAC ACCATTGCAA
GAGGGTAAGT TAAACGCCTA TATGGCCGAG CCTGCCACTT ATGGAATTAC GGTGAAAAAA
CGTTTTTAA
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| Protein sequence | MPILPNRLKR TPAASFIGLA LALNAGLSIA QDVAPDDKGL ETITVTAQKR AQNLQEVPVS
VTAFNGEAMA EAVIKDMYDL QTNVPGLGAF QSQSATNSSF SIRGVGTSSQ NFGLESSVGL
YVDGVYRARQ NSMINNLVDV AAVEVLRGPQ GTLFGKNTPS GAILLSTVAP SHGGGDGFVE
ATVGNYGLVN LSGAVSLSAI EDVLAFRVTG FSSDRDGTID DVNFGEDVLN DRNRFGGRLQ
ALYTPSEDVS LRVIADYAEI DEICCGAPVQ LSNFQANEIP GKFGTDAAID QLGGTRFEGG
EAFFDREVAV SFLPVATMKD RGLSAELDWE LDENYTFVSI SAIRAFDSYD NIDSDFTDAD
LFGTLNDSEQ SSFSQEFRLD YTSEDLNFIL GAYYFTQDLD LNYSLYTDNI FEGFALSVLG
QTVDGLTGAP GTFDALLGGI DGLASAGLIA PRAAAAPAGT GFDHMAEQEH KSYAIFGQFD
YKLTDEFTLT AGLRFTKEKK DLLTVFTEVG PGINGLADNT PVDLVSALTV AGGIAAGAID
LTTAEGQATL GTFQGFSEAG WAFPLLGDTT RPRSNIEESL SDDQISGTLK LSYQPNADTL
LYASYGNGYK SGGTNTDRIA ASFNPIFDAE TSQSFEVGIK KDFREQNLRV NAAAHYTTVD
DFQANTFTGN GFNLQNAGDY EISGMELEAT WIPMDTVEVN FGYALVNAEY KTFEAGNCWT
AYSWHTGIDD PGRVNPTDGF CDRSGDRPGG EPENYAVLSV KKDFELSDSI YAYIQGEYSY
TGDVILDGSN DPYAVQDSYN ILNLRLFMNF TEYDMDVILW GRNILDEEYI NRTNFNTPLQ
EGKLNAYMAE PATYGITVKK RF
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