| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1800 |
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| Symbol | |
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| ID | 4172048 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2161176 |
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| End bp | 2162663 |
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| Gene Length | 1488 bp |
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| Protein Length | 495 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638054810 |
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| Product | 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase |
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| Protein accession | YP_661375 |
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| Protein GI | 109898120 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes |
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| TIGRFAM ID | [TIGR01347] 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component) |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.545172 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAATAG ATATTAAAGT ACCGGTATTG CCAGAATCTG TGGCCGATGC ATCAATTGCC
ACTTGGCATG TGAAGGTAGG TGAACAGGTT ACTCGCGATC AAAACTTGGT CGATATCGAA
ACCGATAAAG TGGTACTTGA AGTGGTTGCT CCTGCAGATG GCGTATTAAG CGACATCCTA
GATGAAGAAG GTGCAACAGT ACTAGGCGAG CAGATAATCG CAAAATTTGA AGAAGGGGCT
GGCGCATCTC AAGCAAAAGA GCAAAGTGCA CCAGCAGCAG AGAAAACATC CAGTAATAAA
GGTGAGTCAG TGGAGATTAA AGTACCTGTT CTGCCCGAAT CAGTGGCAGA TGCAACCGTA
GCAACATGGC ATGTTCAACC AGGCGAATCG GTCTCTCGTG ACCAAAACTT GGTAGATATT
GAAACCGATA AAGTGGTTTT AGAAGTGGTT GCTCCAGCCG ATGGCACCTT GAGTGACATT
CTCGCTCAAG AAGGCGAAAC GGTAATGGGT GAGCAAGTGA TTGCTAATTT TGCTGCAGGC
GCTGCGCCCG CTAAAGCTGA AGCCACTGCT GCCGCTAGTA GTGATACAGG CGGTTCAGAC
AATGACGCCT TAAGCCCTTC AGTACGCCGT CTATTAGCTG AAAAAGGCAT TGATGCTGCG
AGCATCAAAG GTACAGGTAA AGGCGGTCGT GTGACTAAAG AAGACGTTGA GAAATCATTG
TCTGCGCCAG CTAAGAGTGC AGCACCAGCA AAAGCTGACG CACCGGCGAC GCCTTCACTA
GGCGGTGAGC GTTCTGAAAA ACGTGTACCT ATGACACGTC TTCGTAAGAC AATCGCGAGT
CGTTTGCTTG AAGCGAAAAA CTCTACGGCT ATGTTGACAA CGTTCAACGA AGTTAATATG
AAGCCTATCA TGGAATTACG TAAGCAATAT CAAGAGTCGT TCGAGAAACG TCACGGTATT
CGTTTAGGTT TCATGTCTTT CTACGTTAAA GCAGTAACAG AAGCGCTTAA ACGCTTCCCA
GAAGTGAATG CGTCTCTTGA CGGTGATGAT ATTTGTTACC ATAACTACTT CGATGTATCG
ATTGCAGTGT CTACTCCTCG CGGTTTGGTT ACACCTGTAT TGCGCGATTG CGATACACTG
GGTATGGCTG GTATCGAAGG TGGCATCAAA GCACTTGCAC TTAAAGGGCG TGACGGTAAA
TTGTCAATGG CTGATATGCA AGGTGGTAAC TTCACTATCA CTAATGGTGG TGTGTTTGGA
TCATTGCTTT CAACCCCTAT TATTAATCCA CCACAGAGCG CTATCTTGGG AATGCATAAA
ATCCAAGATC GTCCTATGGC GGTGAATGGC AAAGTAGAAA TTTTGCCTAT GATGTATTTA
GCACTTTCTT ATGATCATAG AATCATCGAC GGTAAAGAGT CTGTTGGTTT CTTAGTTACG
ATCAAGGAAA TGTTAGAAGA TCCAACGCGT CTGCTACTGG ATGTTTAA
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| Protein sequence | MSIDIKVPVL PESVADASIA TWHVKVGEQV TRDQNLVDIE TDKVVLEVVA PADGVLSDIL
DEEGATVLGE QIIAKFEEGA GASQAKEQSA PAAEKTSSNK GESVEIKVPV LPESVADATV
ATWHVQPGES VSRDQNLVDI ETDKVVLEVV APADGTLSDI LAQEGETVMG EQVIANFAAG
AAPAKAEATA AASSDTGGSD NDALSPSVRR LLAEKGIDAA SIKGTGKGGR VTKEDVEKSL
SAPAKSAAPA KADAPATPSL GGERSEKRVP MTRLRKTIAS RLLEAKNSTA MLTTFNEVNM
KPIMELRKQY QESFEKRHGI RLGFMSFYVK AVTEALKRFP EVNASLDGDD ICYHNYFDVS
IAVSTPRGLV TPVLRDCDTL GMAGIEGGIK ALALKGRDGK LSMADMQGGN FTITNGGVFG
SLLSTPIINP PQSAILGMHK IQDRPMAVNG KVEILPMMYL ALSYDHRIID GKESVGFLVT
IKEMLEDPTR LLLDV
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