| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1784 |
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| Symbol | |
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| ID | 4172032 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2142878 |
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| End bp | 2143876 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638054794 |
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| Product | D-cysteine desulfhydrase |
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| Protein accession | YP_661359 |
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| Protein GI | 109898104 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2515] 1-aminocyclopropane-1-carboxylate deaminase |
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| TIGRFAM ID | [TIGR01275] pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.181648 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCTTAA GCGCCCTTAA AAAAATAGAA TTGGGCGTTT TCCCTACGCC CATTCATAAA
TTAGCCCGTT TATCAGCTCA TCTTGTTGGC CCGCAGATTT ATATCAAGCG AGATGACCTT
ACCGGTTTAG CGCTTGGGGG CAACAAAACC CGTAAACTCG AATACTTATT AGCTGATGGG
CTAGCCCAAG GCTGTGATTG TATCGTTACT GCAGGTGCGG CTCAGTCAAA TCATTGCAGG
CAGACTGCCG CAGCAGCCGC TACCTTGGGG GTAGAATGCC ATTTGATCTT GGGCGGGCAG
GCCCCAATTA GCGCGAACGG AAACCTACTT CTTGACCAGC TATTTGGAGC ACGTATTCAT
TGGGCTGGTC AGAAGCGCAA AGGTGAAGAT ATTCCTGATA TTGTCAGCAC GTTGCAAAAG
CAAGGAAAGA GACCTTATGT TGTACCGTAT GGGGGCTCTA ATACCATAGG TTCAGCCGGG
TTTATCGACG CCTTCAAAGA GCTACAACAG CAGTGTCACG CTAGTAGTCA AGTAATTGAA
TTTTCAGATA TTGTCTTCGC GTCTAGCTCG GGAGCAACCC ATTGCGGATT AGTGCTTGGA
AAAGCGCTGT GTGATGCCGC CAGTAATATT ATTGGAATCA ATATTGATAA AGATGAGCAA
GGCAAAGATA GCTTTAAATC TCAGCTGCAA ACGCTGATCG AGGATACCGC TCGAACATTC
TCGATTAACT ACGATGGTAC AGTGGATGAT GTACAGTTAA TCGATGATTA TATCGGCCAA
GGATATGGCG TGGTGGGCAA TTTAGAGCGT GAAGCGATAT CTTTGTGCGC CCAACTTGAA
GGGATATTGT TAGACCCTGT ATACACTGGA CGGGCGATGG GCGGTTTAAT TGACATGATC
CGTCAAGGTC GTTTTGCTTC AAACAGTAAT GTGCTTTTTT GGCACACTGG TGGGGCGCCT
GCTATCTTTG CATATGCCGA TGCATTACAA CCAAGTTGA
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| Protein sequence | MPLSALKKIE LGVFPTPIHK LARLSAHLVG PQIYIKRDDL TGLALGGNKT RKLEYLLADG
LAQGCDCIVT AGAAQSNHCR QTAAAAATLG VECHLILGGQ APISANGNLL LDQLFGARIH
WAGQKRKGED IPDIVSTLQK QGKRPYVVPY GGSNTIGSAG FIDAFKELQQ QCHASSQVIE
FSDIVFASSS GATHCGLVLG KALCDAASNI IGINIDKDEQ GKDSFKSQLQ TLIEDTARTF
SINYDGTVDD VQLIDDYIGQ GYGVVGNLER EAISLCAQLE GILLDPVYTG RAMGGLIDMI
RQGRFASNSN VLFWHTGGAP AIFAYADALQ PS
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